SMTL ID : 6go9.1

Structure of GFPmut2 crystallized at pH 6 and transferred to pH 7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 4 residues within 4Å: Chain A: E.99, R.100, T.101, Y.186 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.101 Water bridges: A:K.111 MPD.5: 5 residues within 4Å: Chain A: R.113, E.115, R.126, I.127, E.128 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:E.115 Hydrogen bonds: A:R.113, A:R.113, A:E.128 Water bridges: A:E.115, A:E.115

3 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.2: 5 residues within 4Å: Chain A: Y.155, M.157, K.166, V.167, N.168 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.155, A:M.157, A:K.166 Hydrogen bonds: A:N.168, A:N.168 Water bridges: A:Y.155, A:N.168 MRD.3: 2 residues within 4Å: Chain A: Y.155, Y.204 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.155 Hydrogen bonds: A:Y.204 MRD.4: 3 residues within 4Å: Chain A: V.17, P.19, E.40 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.17, A:P.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lolli, G. et al., Insight into GFPmut2 pH Dependence by Single Crystal Microspectrophotometry and X-ray Crystallography. J.Phys.Chem.B (2018)

Release Date

2018-12-19

Peptides

Green fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Green fluorescent protein

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