SMTL ID : 6gpe.2 (1 other biounit)

Crystal Structure of the CsiD Glutarate Hydroxylase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x FE2: FE (II) ION(Non-covalent)

FE2.1: 3 residues within 4Å: Chain A: H.180, D.182, H.312 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.180, A:D.182, A:H.312, H2O.4, H2O.9, H2O.9 FE2.2: 3 residues within 4Å: Chain B: H.180, D.182, H.312 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.180, B:D.182, B:H.312, H2O.15, H2O.20, H2O.20 FE2.3: 3 residues within 4Å: Chain C: H.180, D.182, H.312 6 PLIP interactions: 3 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:H.180, C:D.182, C:H.312, H2O.26, H2O.31, H2O.32 FE2.4: 3 residues within 4Å: Chain D: H.180, D.182, H.312 6 PLIP interactions: 3 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:H.180, D:D.182, D:H.312, H2O.37, H2O.42, H2O.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Knorr, S. et al., Widespread bacterial lysine degradation proceeding via glutarate and L-2-hydroxyglutarate. Nat Commun (2018)

Release Date

2018-12-12

Peptides

Protein CsiD: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

D
B

Protein CsiD

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