SMTL ID : 6gpx.2 (1 other biounit)

CRYSTAL STRUCTURE OF CCR2A IN COMPLEX WITH MK-0812

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

3 x OLA: OLEIC ACID(Non-functional Binders)(Non-covalent)

OLA.1: 10 residues within 4Å: Chain A: T.280, P.281, I.284, V.285, L.288, Q.305, L.306, A.309, T.313 Ligands: OLA.2 No protein-ligand interaction detected (PLIP) OLA.2: 10 residues within 4Å: Chain A: L.277, P.281, V.285, Q.305, Q.308, A.309, V.312, T.313, L.316 Ligands: OLA.1 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.309, A:L.316 OLA.3: 7 residues within 4Å: Chain A: L.62, I.65, F.80, A.83, M.84, L.87, L.91 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.62, A:L.91 Water bridges: A:F.80, A:M.84

1 x F7N: [(3~{S},4~{S})-3-methoxyoxan-4-yl]-[(1~{R},3~{S})-3-propan-2-yl-3-[[3-(trifluoromethyl)-7,8-dihydro-5~{H}-1,6-naphthyridin-6-yl]carbonyl]cyclopentyl]azanium(Non-covalent)

F7N.4: 24 residues within 4Å: Chain A: V.9, K.10, I.12, G.13, L.16, L.17, Y.21, W.70, S.73, A.74, T.89, Y.92, H.93, N.147, T.151, C.162, G.163, P.164, R.178, Q.311, V.312, E.314, T.315, M.318 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.17, A:L.17, A:W.70, A:A.74, A:Q.311 Hydrogen bonds: A:Y.21, A:E.314

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Apel, A.K. et al., Crystal Structure of CC Chemokine Receptor 2A in Complex with an Orthosteric Antagonist Provides Insights for the Design of Selective Antagonists. Structure (2019)

Release Date

2019-01-02

Peptides

C-C chemokine receptor type 2,Rubredoxin,C-C chemokine receptor type 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Membrane

We predict this structure to be a membrane protein.
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C-C chemokine receptor type 2,Rubredoxin,C-C chemokine receptor type 2

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