SMTL ID : 6gqn.1

Cell division regulator, S. pneumoniae GpsB, in complex with peptide fragment of Penicillin Binding Protein PBP2a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-2-2-mer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.6, K.8, D.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.6, A:S.6 Salt bridges: A:K.8 SO4.2: 4 residues within 4Å: Chain A: S.6, A.7, K.8 Chain D: R.5 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A Salt bridges: D:R.5 Hydrogen bonds: A:K.8 SO4.3: 8 residues within 4Å: Chain A: Y.22 Chain B: Q.13, E.14, F.15, R.17, K.24 Chain C: R.5, R.10 8 PLIP interactions: 5 interactions with chain B, 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: B:F.15, B:F.15, A:Y.22 Water bridges: B:R.17 Salt bridges: B:R.17, B:K.24, C:R.5, C:R.10 SO4.4: 2 residues within 4Å: Chain B: S.6, D.9 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.6 Water bridges: B:S.6, B:A.7 Salt bridges: B:K.8 SO4.5: 2 residues within 4Å: Chain B: R.17, K.24 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.17, B:K.24 SO4.7: 4 residues within 4Å: Chain C: R.4, S.6, R.7, S.8 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.8, C:S.8 Salt bridges: C:R.4

1 x NI: NICKEL (II) ION(Non-covalent)

NI.6: 3 residues within 4Å: Chain A: I.52, K.56 Chain B: E.51 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.51, B:E.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cleverley, R.M. et al., The cell cycle regulator GpsB functions as cytosolic adaptor for multiple cell wall enzymes. Nat Commun (2019)

Release Date

2019-01-23

Peptides

Cell cycle protein GpsB: AB
SpPBP2a: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
G

Cell cycle protein GpsB

SpPBP2a

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