SMTL ID : 6grr.1

Crystal structure of Escherichia coli amine oxidase mutant I342F/E573Q

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: Y.460, H.518, H.520, H.683 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:Y.460, A:H.518, A:H.520, A:H.683 CU.9: 5 residues within 4Å: Chain B: Y.461, E.485, H.519, H.521, H.684 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:Y.461, B:H.519, B:H.521, B:H.684

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: K.127, D.527, L.528, D.529, D.672, A.673 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.527, A:L.528, A:D.529, A:D.672, A:A.673, H2O.4 CA.10: 6 residues within 4Å: Chain B: K.128, D.528, L.529, D.530, D.673, A.674 6 PLIP interactions: 5 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.528, B:L.529, B:D.530, B:D.673, B:A.674, H2O.31

11 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: K.154, H.155, A.177, H.178, D.233 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.155, A:H.178 Water bridges: A:I.156, A:D.176, A:D.176 GOL.4: 9 residues within 4Å: Chain A: Y.427, E.445, R.447 Chain B: M.301, Q.302, I.303, G.394, P.398, S.399 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:I.303, B:G.394, B:S.399, A:R.447 Water bridges: B:M.301, B:M.301 GOL.5: 8 residues within 4Å: Chain A: R.446, H.469, N.471, T.473, K.703 Chain B: T.607, R.687, E.697 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:R.446, A:N.471, A:K.703, B:T.607, B:R.687 Water bridges: A:N.471, B:R.687, B:E.697 GOL.6: 6 residues within 4Å: Chain A: R.426, D.465, I.467, D.477, W.697, H.699 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.426, A:R.426 Water bridges: A:H.699, B:A.429 GOL.7: 8 residues within 4Å: Chain A: T.503, R.504, G.506, T.507, V.684 Chain B: M.541, V.560 Ligands: GOL.12 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.504, A:T.507, B:V.560 GOL.8: 7 residues within 4Å: Chain A: Q.561, L.581, N.593, P.594, S.596, W.705, N.706 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.561, A:S.596, A:W.705, A:N.706 Water bridges: B:T.508 GOL.11: 9 residues within 4Å: Chain A: M.300, Q.301, I.302, G.393, P.397, S.398 Chain B: Y.428, E.446, R.448 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:R.448, A:I.302, A:S.398 Water bridges: A:M.300 GOL.12: 8 residues within 4Å: Chain B: Q.562, L.582, N.594, P.595, S.597, W.706, N.707 Ligands: GOL.7 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.562, B:S.597, B:W.706, B:N.707 GOL.13: 3 residues within 4Å: Chain B: D.619, W.621, H.624 No protein-ligand interaction detected (PLIP) GOL.14: 8 residues within 4Å: Chain A: T.606, T.695, E.696 Chain B: R.447, H.470, N.472, T.474, K.704 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.447, B:H.470, B:N.472, B:N.472, A:E.696 Water bridges: B:T.474 GOL.15: 6 residues within 4Å: Chain B: R.427, D.466, I.468, D.478, W.698, H.700 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.427, B:R.427, B:D.466, B:D.466, B:D.478 Water bridges: B:R.453

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gaule, T.G. et al., Oxygen Activation Switch in the Copper Amine Oxidase of Escherichia coli. Biochemistry (2018)

Release Date

2018-09-05

Peptides

Amine oxidase: A
Amine oxidase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Amine oxidase

Amine oxidase