SMTL ID : 6gry.1

Glucuronoyl Esterase from Solibacter usitatus.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 10 residues within 4Å: Chain A: R.37, R.55, W.211, S.214, R.215, A.248, Q.249, D.250, A.251, R.252 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.37, A:R.37, A:R.215, A:R.215, A:A.248, A:A.251, A:R.252 PG4.2: 6 residues within 4Å: Chain A: K.51, S.52, P.53, F.190, D.202, W.203 No protein-ligand interaction detected (PLIP)

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: F.348, G.349, K.350 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.348, A:K.350 EDO.4: 2 residues within 4Å: Chain A: H.362, Y.383 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.381 EDO.5: 3 residues within 4Å: Chain A: E.386, L.389, K.390 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.390 EDO.6: 2 residues within 4Å: Chain A: V.66, K.68 No protein-ligand interaction detected (PLIP) EDO.7: 8 residues within 4Å: Chain A: A.179, G.180, M.182, R.187, P.198, G.204, P.285, H.286 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.187, A:R.187 Water bridges: A:H.286 EDO.8: 8 residues within 4Å: Chain A: R.55, P.57, K.58, L.59, D.218, E.221, K.222, R.252 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.55, A:P.57, A:D.218 Water bridges: A:R.55 EDO.9: 6 residues within 4Å: Chain A: W.32, T.33, R.37, A.314, P.315, F.348 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.314 Water bridges: A:R.316 EDO.10: 5 residues within 4Å: Chain A: R.370, K.390, F.391, K.393, A.394 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.370 Water bridges: A:K.393 EDO.11: 4 residues within 4Å: Chain A: R.229, R.230, Q.395, W.396 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.230 EDO.12: 4 residues within 4Å: Chain A: A.29, K.30, T.33, F.348 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.30, A:T.33 EDO.13: 6 residues within 4Å: Chain A: K.105, P.108, Y.164, R.230, W.396, G.397 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.105 Water bridges: A:Y.164 EDO.14: 5 residues within 4Å: Chain A: T.254, R.316, G.317, Q.395 Ligands: PEG.19 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.395 EDO.15: 5 residues within 4Å: Chain A: N.60, F.83, S.85, D.86, K.87 No protein-ligand interaction detected (PLIP)

6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.16: 6 residues within 4Å: Chain A: F.115, H.236, S.237, R.238, H.378 Ligands: PGE.22 No protein-ligand interaction detected (PLIP) PEG.17: 13 residues within 4Å: Chain A: S.237, R.238, K.241, S.261, G.262, E.263, A.267, R.276, L.280, W.287, W.328, S.329, D.330 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.241, A:E.263, A:R.276, A:D.330 Water bridges: A:R.238, A:G.262 PEG.18: 6 residues within 4Å: Chain A: D.5, V.9, R.271, D.272, R.276, D.330 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.5, A:D.5 PEG.19: 7 residues within 4Å: Chain A: P.315, R.316, G.317, K.350, S.368, Q.395 Ligands: EDO.14 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.368, A:Q.395 Water bridges: A:K.350 PEG.20: 8 residues within 4Å: Chain A: K.64, S.65, I.79, T.81, K.92, D.94, I.118, P.128 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.92 PEG.21: 2 residues within 4Å: Chain A: K.183, Y.184 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.183

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.22: 11 residues within 4Å: Chain A: F.115, W.133, T.134, R.135, N.137, Y.171, E.172, D.177, F.178, R.238 Ligands: PEG.16 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.172 Water bridges: A:R.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arnling Baath, J. et al., Biochemical and structural features of diverse bacterial glucuronoyl esterases facilitating recalcitrant biomass conversion. Biotechnol Biofuels (2018)

Release Date

2018-08-15

Peptides

Putative acetyl xylan esterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative acetyl xylan esterase

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