SMTL ID : 6gu8.1

Glucuronoyl Esterase from Solibacter usitatus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: H.362, Y.383 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.362 EDO.2: 6 residues within 4Å: Chain A: R.229, R.230, T.254, Q.395, W.396, G.397 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.229, A:G.397 EDO.3: 5 residues within 4Å: Chain A: K.58, L.59, N.60, Y.61, E.62 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.59, A:Y.61 EDO.4: 8 residues within 4Å: Chain A: R.238, L.280, R.283, F.284, W.287, Q.327 Ligands: PEG.9, PEG.11 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.238, A:R.283, A:Q.327 EDO.5: 11 residues within 4Å: Chain A: L.113, S.114, F.115, R.153, W.154, I.234, H.236, L.239, V.380, W.385 Ligands: PEG.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.153 Water bridges: A:L.113, A:F.115, A:H.236 EDO.6: 5 residues within 4Å: Chain A: K.92, D.94, A.130, E.131, Q.173 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.131, A:Q.173 Water bridges: A:K.92, A:D.94 EDO.7: 6 residues within 4Å: Chain A: V.9, R.271, D.272, R.276, W.328, D.330 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.271, A:W.328 EDO.8: 7 residues within 4Å: Chain A: W.133, T.134, R.135, Y.171, E.172, D.177, F.178 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.177 Water bridges: A:E.172, A:R.238

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.9: 9 residues within 4Å: Chain A: F.115, E.150, H.236, S.237, R.238, Q.327, H.378 Ligands: EDO.4, EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.327 PEG.10: 10 residues within 4Å: Chain A: S.52, P.53, A.54, R.55, W.211, S.214, R.215, Q.249, D.250, R.252 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.215, A:R.215, A:Q.249, A:R.252 Water bridges: A:R.252 PEG.11: 13 residues within 4Å: Chain A: S.237, R.238, K.241, E.260, S.261, G.262, E.263, R.276, L.280, W.287, S.329, H.378 Ligands: EDO.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.238, A:K.241, A:E.263 Water bridges: A:E.260, A:S.261, A:R.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arnling Baath, J. et al., Biochemical and structural features of diverse bacterial glucuronoyl esterases facilitating recalcitrant biomass conversion. Biotechnol Biofuels (2018)

Release Date

2018-08-15

Peptides

Putative acetyl xylan esterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative acetyl xylan esterase

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