SMTL ID : 6gvy.1

Mutant M16A of RNA dependent RNA polymerase 3D from Foot-and-Mouth disease Virus complexed with an template -primer RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x C- C- G- G- G: RNA (5'-R(P*CP*CP*GP*GP*G)-3')(Non-covalent)

C-C-G-G-G.1: 23 residues within 4Å: Chain A: S.304, Y.336, G.337, D.338, D.339, L.386, K.387, R.388, I.411, R.416, T.419, E.422, K.423, S.426, V.427, L.430 Ligands: U-C-C-C-G-G-G.2, U-C-C-C-G-G-G.2, U-C-C-C-G-G-G.2, U-C-C-C-G-G-G.2, U-C-C-C-G-G-G.2, U-C-C-C-G-G-G.2, U-C-C-C-G-G-G.2 Protein-ligand interaction information (PLIP) not available

1 x U- C- C- C- G- G- G: RNA (5'-R(P*CP*UP*CP*CP*CP*GP*GP*G)-3')(Non-covalent)

U-C-C-C-G-G-G.2: 34 residues within 4Å: Chain A: G.107, L.108, D.109, E.112, T.115, A.116, R.128, F.162, K.164, V.181, V.183, I.189, R.193, H.204, G.216, C.217, N.218, S.298, G.299, C.300, S.301, A.302, T.303, S.304, Y.336, E.422, I.425, S.426, R.461 Ligands: C-C-G-G-G.1, C-C-G-G-G.1, C-C-G-G-G.1, C-C-G-G-G.1, C-C-G-G-G.1 Protein-ligand interaction information (PLIP) not available

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: Y.81, R.84, P.209, N.312, L.328, Y.331, M.333 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.84, A:L.328, A:M.333, A:M.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de la Higuera, I. et al., Contribution of a Multifunctional Polymerase Region of Foot-and-Mouth Disease Virus to Lethal Mutagenesis. J. Virol. (2018)

Release Date

2018-08-01

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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