SMTL ID : 6gyj.1

Mouse thymidylate synthase crystal soaked in phenolphthalein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.209, S.210 Chain B: R.169, R.170 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:S.210 Water bridges: A:R.44, B:R.169, B:R.169, B:R.169 Salt bridges: A:R.209, B:R.169, B:R.170 SO4.5: 5 residues within 4Å: Chain A: R.169, R.170 Chain B: R.44, R.209, S.210 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:S.210, B:S.210 Water bridges: B:R.44, A:R.169, A:R.169 Salt bridges: B:R.209, A:R.169, A:R.170

1 x FGT: 3,3-bis(4-hydroxyphenyl)-2-benzofuran-1-one(Non-covalent)

FGT.2: 9 residues within 4Å: Chain A: E.81, I.102, H.190, D.212, L.215, G.216, F.219, N.220 Ligands: DMS.4 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.102, A:I.102, A:D.212, A:L.215, A:L.215, A:L.215, A:F.219, A:F.219, A:F.219 Hydrogen bonds: A:N.220 Water bridges: A:Y.129, A:H.190, A:Y.252

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 3 residues within 4Å: Chain A: R.72, P.299, T.300 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.72 DMS.4: 5 residues within 4Å: Chain A: I.102, W.103, N.106, L.186 Ligands: FGT.2 2 PLIP interactions: 2 interactions with chain A pi-Cation interactions: A:W.103, A:W.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maj, P. et al., Thymidylate synthase fragment screening. To be published

Release Date

2019-08-28

Peptides

Thymidylate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thymidylate synthase

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