- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x CMP: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE(Non-covalent)
- 28 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
PC1.2: 11 residues within 4Å:- Chain A: W.143, L.187, L.190, L.193, S.194, I.197, R.198, W.233
- Ligands: PC1.5, PC1.10, PC1.11
Ligand excluded by PLIPPC1.3: 8 residues within 4Å:- Chain A: S.262, W.263, G.264, Y.267
- Chain B: M.291, W.295
- Ligands: 3PE.7, PC1.14
Ligand excluded by PLIPPC1.4: 12 residues within 4Å:- Chain A: T.306, M.310
- Chain D: I.224, M.227, L.228, M.278, L.279, L.318, I.319, L.322
- Ligands: 3PE.8, PC1.38
Ligand excluded by PLIPPC1.5: 4 residues within 4Å:- Chain A: H.201, D.234
- Ligands: PC1.2, 3PE.8
Ligand excluded by PLIPPC1.9: 2 residues within 4Å:- Chain A: V.221
- Ligands: PC1.19
Ligand excluded by PLIPPC1.10: 8 residues within 4Å:- Chain A: Q.245, M.291, S.292, W.295, L.299
- Ligands: PC1.2, PC1.11, PC1.43
Ligand excluded by PLIPPC1.11: 7 residues within 4Å:- Chain A: R.177, R.180, I.184, L.187, L.244
- Ligands: PC1.2, PC1.10
Ligand excluded by PLIPPC1.14: 8 residues within 4Å:- Chain B: Q.245, M.291, S.292, W.295, L.299
- Ligands: PC1.3, PC1.15, PC1.17
Ligand excluded by PLIPPC1.15: 7 residues within 4Å:- Chain B: R.177, R.180, I.184, L.187, L.244
- Ligands: PC1.14, PC1.17
Ligand excluded by PLIPPC1.17: 11 residues within 4Å:- Chain B: W.143, L.187, L.190, L.193, S.194, I.197, R.198, W.233
- Ligands: PC1.14, PC1.15, PC1.20
Ligand excluded by PLIPPC1.18: 8 residues within 4Å:- Chain B: S.262, W.263, G.264, Y.267
- Chain C: M.291, W.295
- Ligands: 3PE.22, PC1.26
Ligand excluded by PLIPPC1.19: 12 residues within 4Å:- Chain A: I.224, M.227, L.228, M.278, L.279, L.318, I.319, L.322
- Chain B: T.306, M.310
- Ligands: PC1.9, 3PE.23
Ligand excluded by PLIPPC1.20: 4 residues within 4Å:- Chain B: H.201, D.234
- Ligands: PC1.17, 3PE.23
Ligand excluded by PLIPPC1.24: 2 residues within 4Å:- Chain B: V.221
- Ligands: PC1.31
Ligand excluded by PLIPPC1.26: 8 residues within 4Å:- Chain C: Q.245, M.291, S.292, W.295, L.299
- Ligands: PC1.18, PC1.27, PC1.29
Ligand excluded by PLIPPC1.27: 7 residues within 4Å:- Chain C: R.177, R.180, I.184, L.187, L.244
- Ligands: PC1.26, PC1.29
Ligand excluded by PLIPPC1.29: 11 residues within 4Å:- Chain C: W.143, L.187, L.190, L.193, S.194, I.197, R.198, W.233
- Ligands: PC1.26, PC1.27, PC1.32
Ligand excluded by PLIPPC1.30: 7 residues within 4Å:- Chain C: S.262, W.263, G.264, Y.267
- Chain D: W.295
- Ligands: 3PE.34, PC1.39
Ligand excluded by PLIPPC1.31: 12 residues within 4Å:- Chain B: I.224, M.227, L.228, M.278, L.279, L.318, I.319, L.322
- Chain C: T.306, M.310
- Ligands: PC1.24, 3PE.35
Ligand excluded by PLIPPC1.32: 4 residues within 4Å:- Chain C: H.201, D.234
- Ligands: PC1.29, 3PE.35
Ligand excluded by PLIPPC1.36: 2 residues within 4Å:- Chain C: V.221
- Ligands: PC1.44
Ligand excluded by PLIPPC1.38: 2 residues within 4Å:- Chain D: V.221
- Ligands: PC1.4
Ligand excluded by PLIPPC1.39: 8 residues within 4Å:- Chain D: Q.245, M.291, S.292, W.295, L.299
- Ligands: PC1.30, PC1.40, PC1.42
Ligand excluded by PLIPPC1.40: 7 residues within 4Å:- Chain D: R.177, R.180, I.184, L.187, L.244
- Ligands: PC1.39, PC1.42
Ligand excluded by PLIPPC1.42: 11 residues within 4Å:- Chain D: W.143, L.187, L.190, L.193, S.194, I.197, R.198, W.233
- Ligands: PC1.39, PC1.40, PC1.45
Ligand excluded by PLIPPC1.43: 7 residues within 4Å:- Chain A: W.295
- Chain D: S.262, W.263, G.264, Y.267
- Ligands: PC1.10, 3PE.47
Ligand excluded by PLIPPC1.44: 12 residues within 4Å:- Chain C: I.224, M.227, L.228, M.278, L.279, L.318, I.319, L.322
- Chain D: T.306, M.310
- Ligands: PC1.36, 3PE.48
Ligand excluded by PLIPPC1.45: 4 residues within 4Å:- Chain D: H.201, D.234
- Ligands: PC1.42, 3PE.48
Ligand excluded by PLIP- 4 x PIE: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOINOSITOL(Non-covalent)
PIE.6: 11 residues within 4Å:- Chain A: N.29, F.31, S.61, D.62, F.65, Y.66, L.69, I.206, F.207, H.208, M.209
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:L.69, A:F.207
- Hydrogen bonds: A:N.29, A:D.62, A:D.62, A:D.62, A:Y.66, A:H.208
PIE.21: 11 residues within 4Å:- Chain B: N.29, F.31, S.61, D.62, F.65, Y.66, L.69, I.206, F.207, H.208, M.209
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:L.69, B:F.207
- Hydrogen bonds: B:N.29, B:D.62, B:D.62, B:D.62, B:Y.66, B:H.208
PIE.33: 11 residues within 4Å:- Chain C: N.29, F.31, S.61, D.62, F.65, Y.66, L.69, I.206, F.207, H.208, M.209
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:L.69, C:F.207
- Hydrogen bonds: C:N.29, C:D.62, C:D.62, C:D.62, C:Y.66, C:H.208
PIE.46: 11 residues within 4Å:- Chain D: N.29, F.31, S.61, D.62, F.65, Y.66, L.69, I.206, F.207, H.208, M.209
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:L.69, D:F.207
- Hydrogen bonds: D:N.29, D:D.62, D:D.62, D:D.62, D:Y.66, D:H.208
- 8 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)
3PE.7: 17 residues within 4Å:- Chain A: L.73, V.76, G.77, I.81, V.84, G.85, F.89, D.91, E.92, T.94, W.97, F.100, H.232, Y.267, L.271
- Ligands: PC1.3, 3PE.8
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.76, A:I.81, A:V.84, A:L.271
3PE.8: 22 residues within 4Å:- Chain A: V.76, I.80, L.196, I.197, I.200, H.201, E.204, R.219, N.222, L.223, G.225, M.226, L.228, L.299, I.302, V.303, T.306, C.307, M.310
- Ligands: PC1.4, PC1.5, 3PE.7
15 PLIP interactions:15 interactions with chain A- Hydrophobic interactions: A:V.76, A:V.76, A:I.80, A:L.196, A:I.197, A:I.200, A:N.222, A:L.228, A:L.299, A:V.303, A:T.306
- Hydrogen bonds: A:N.222
- Salt bridges: A:H.201, A:H.201, A:R.219
3PE.22: 17 residues within 4Å:- Chain B: L.73, V.76, G.77, I.81, V.84, G.85, F.89, D.91, E.92, T.94, W.97, F.100, H.232, Y.267, L.271
- Ligands: PC1.18, 3PE.23
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:V.76, B:I.81, B:V.84, B:L.271
3PE.23: 22 residues within 4Å:- Chain B: V.76, I.80, L.196, I.197, I.200, H.201, E.204, R.219, N.222, L.223, G.225, M.226, L.228, L.299, I.302, V.303, T.306, C.307, M.310
- Ligands: PC1.19, PC1.20, 3PE.22
15 PLIP interactions:15 interactions with chain B- Hydrophobic interactions: B:V.76, B:V.76, B:I.80, B:L.196, B:I.197, B:I.200, B:N.222, B:L.228, B:L.299, B:V.303, B:T.306
- Hydrogen bonds: B:N.222
- Salt bridges: B:H.201, B:H.201, B:R.219
3PE.34: 17 residues within 4Å:- Chain C: L.73, V.76, G.77, I.81, V.84, G.85, F.89, D.91, E.92, T.94, W.97, F.100, H.232, Y.267, L.271
- Ligands: PC1.30, 3PE.35
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:V.76, C:I.81, C:V.84, C:L.271
3PE.35: 22 residues within 4Å:- Chain C: V.76, I.80, L.196, I.197, I.200, H.201, E.204, R.219, N.222, L.223, G.225, M.226, L.228, L.299, I.302, V.303, T.306, C.307, M.310
- Ligands: PC1.31, PC1.32, 3PE.34
15 PLIP interactions:15 interactions with chain C- Hydrophobic interactions: C:V.76, C:V.76, C:I.80, C:L.196, C:I.197, C:I.200, C:N.222, C:L.228, C:L.299, C:V.303, C:T.306
- Hydrogen bonds: C:N.222
- Salt bridges: C:H.201, C:H.201, C:R.219
3PE.47: 17 residues within 4Å:- Chain D: L.73, V.76, G.77, I.81, V.84, G.85, F.89, D.91, E.92, T.94, W.97, F.100, H.232, Y.267, L.271
- Ligands: PC1.43, 3PE.48
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:V.76, D:I.81, D:V.84, D:L.271
3PE.48: 22 residues within 4Å:- Chain D: V.76, I.80, L.196, I.197, I.200, H.201, E.204, R.219, N.222, L.223, G.225, M.226, L.228, L.299, I.302, V.303, T.306, C.307, M.310
- Ligands: PC1.44, PC1.45, 3PE.47
15 PLIP interactions:15 interactions with chain D- Hydrophobic interactions: D:V.76, D:V.76, D:I.80, D:L.196, D:I.197, D:I.200, D:N.222, D:L.228, D:L.299, D:V.303, D:T.306
- Hydrogen bonds: D:N.222
- Salt bridges: D:H.201, D:H.201, D:R.219
- 4 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
UNX.12: 4 residues within 4Å:- Chain A: H.208, D.212
- Chain D: H.354, E.358
No protein-ligand interaction detected (PLIP)UNX.13: 4 residues within 4Å:- Chain A: H.354, E.358
- Chain B: H.208, D.212
No protein-ligand interaction detected (PLIP)UNX.25: 4 residues within 4Å:- Chain B: H.354, E.358
- Chain C: H.208, D.212
No protein-ligand interaction detected (PLIP)UNX.37: 4 residues within 4Å:- Chain C: H.354, E.358
- Chain D: H.208, D.212
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shintre, C.A. et al., Structure of human HCN4 hyperpolarization-activated cyclic nucleotide-gated ion channel. To Be Published
- Release Date
- 2019-05-01
- Peptides
- Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x CMP: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE(Non-covalent)
- 28 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
- 4 x PIE: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOINOSITOL(Non-covalent)
- 8 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)
- 4 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shintre, C.A. et al., Structure of human HCN4 hyperpolarization-activated cyclic nucleotide-gated ion channel. To Be Published
- Release Date
- 2019-05-01
- Peptides
- Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.