SMTL ID : 6gys.1

Cryo-EM structure of the CBF3-CEN3 complex of the budding yeast kinetochore

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 4.40 Å

Oligo State

hetero-2-4-2-2-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain B: C.14, C.17, C.24, C.30, C.33 Ligands: ZN.2 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:C.14, B:C.17 ZN.2: 6 residues within 4Å: Chain B: C.14, V.16, C.30, C.33, C.42 Ligands: ZN.1 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.14, B:C.33, B:C.42 ZN.3: 6 residues within 4Å: Chain C: C.14, C.17, C.24, C.30, N.32 Ligands: ZN.4 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:C.17, C:C.30 ZN.4: 6 residues within 4Å: Chain C: C.14, V.16, C.30, C.33, C.42 Ligands: ZN.3 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:C.14, C:C.33 ZN.5: 5 residues within 4Å: Chain I: C.17, R.20, C.30, C.33 Ligands: ZN.6 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:C.17, I:C.30 ZN.6: 7 residues within 4Å: Chain I: C.14, C.17, R.20, C.30, C.33, C.42 Ligands: ZN.5 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:C.33, I:C.42 ZN.7: 6 residues within 4Å: Chain J: C.14, C.17, V.22, D.25, C.30 Ligands: ZN.8 2 PLIP interactions: 2 interactions with chain J Metal complexes: J:C.17, J:C.30 ZN.8: 7 residues within 4Å: Chain J: C.14, V.16, P.29, C.30, C.33, C.42 Ligands: ZN.7 2 PLIP interactions: 2 interactions with chain J Metal complexes: J:C.30, J:C.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, K. et al., Architecture of the CBF3-centromere complex of the budding yeast kinetochore. Nat. Struct. Mol. Biol. (2018)

Release Date

2018-12-05

Peptides

Centromere DNA-binding protein complex CBF3 subunit C: AH
Centromere DNA-binding protein complex CBF3 subunit B: BCIJ
Suppressor of kinetochore protein 1: DK
Centromere DNA-binding protein complex CBF3 subunit A: EL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

H
H

B
B

C
C

I
I

J
J

D
D

K
K

E
E

L
L

Centromere DNA-binding protein complex CBF3 subunit C

Centromere DNA-binding protein complex CBF3 subunit B

Suppressor of kinetochore protein 1

Centromere DNA-binding protein complex CBF3 subunit A

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