SMTL ID : 6gyx.1

Crystal structure of DacA from Staphylococcus aureus in complex with ApCpp

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x APC: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Covalent)(Non-covalent)

APC.1: 13 residues within 4Å: Chain A: L.42, H.81, D.82, G.83, A.84, S.97, Y.98, L.99, L.101, T.113, R.114, A.117 Ligands: MN.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:H.81, A:G.83, A:L.99, A:L.99, A:R.114, A:R.114 pi-Stacking: A:Y.98, A:Y.98 APC.3: 14 residues within 4Å: Chain B: L.42, H.81, D.82, G.83, A.84, Y.98, L.99, P.100, L.101, G.112, T.113, R.114, A.117, E.134 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:H.81, B:H.81, B:D.82, B:G.83, B:L.99, B:L.99, B:T.113, B:T.113, B:R.114, B:E.134

1 x MN: MANGANESE (II) ION(Non-functional Binders)

MN.2: 1 residues within 4Å: Ligands: APC.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tosi, T. et al., Inhibition of the Staphylococcus aureus c-di-AMP cyclase DacA by direct interaction with the phosphoglucosamine mutase GlmM. PLoS Pathog. (2019)

Release Date

2019-01-23

Peptides

Diadenylate cyclase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Diadenylate cyclase

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