SMTL ID : 6gz8.1

First GerMN domain of the sporulation protein GerM from Bacillus subtilis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.00 Å

Oligo State

monomer

Ligands

11 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: T.98, F.100, S.101, I.103, D.104 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.100 NA.2: 3 residues within 4Å: Chain A: N.12, G.13, K.88 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.12 NA.3: 3 residues within 4Å: Chain A: K.24, S.25 Ligands: NA.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.24 Water bridges: A:E.26 NA.4: 5 residues within 4Å: Chain A: P.23, K.24, S.25, Q.31 Ligands: NA.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.24, A:Q.31 NA.5: 3 residues within 4Å: Chain A: E.26, S.27, T.28 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.28, A:T.28 Water bridges: A:A.29 NA.6: 3 residues within 4Å: Chain A: Q.38, P.55, A.56 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.38, A:A.56 Water bridges: A:Q.38, A:N.80 NA.7: 5 residues within 4Å: Chain A: D.10, K.11, N.48, G.49, F.50 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.11, A:G.49 NA.8: 3 residues within 4Å: Chain A: D.10, V.16, F.50 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.10 Water bridges: A:D.10, A:D.10 NA.9: 5 residues within 4Å: Chain A: I.64, K.65, K.66, G.68, S.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.68, A:S.102 NA.10: 8 residues within 4Å: Chain A: V.2, R.4, L.22, P.23, K.24, S.25, T.28, Q.31 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.4, A:R.4, A:P.23, A:Q.31 Water bridges: A:S.25 NA.11: 2 residues within 4Å: Chain A: K.83, E.84 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.83, A:E.84

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.12: 8 residues within 4Å: Chain A: T.59, V.60, N.61, D.73, F.74, S.75, N.111, G.112 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.61, A:D.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trouve, J. et al., Structural characterization of the sporulation protein GerM from Bacillus subtilis. J. Struct. Biol. (2018)

Release Date

2018-10-10

Peptides

Spore germination protein GerM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Spore germination protein GerM