SMTL ID : 6gzh.1

Crystal Structure of Human CDK9/cyclinT1 with A86

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.17 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LCI: [4-[[4-[5-(cyclopropylmethyl)-1-methyl-pyrazol-4-yl]-5-fluoranyl-pyrimidin-2-yl]amino]cyclohexyl]azanium(Non-covalent)

LCI.1: 13 residues within 4Å: Chain A: I.25, G.26, F.30, V.33, A.46, V.79, F.103, D.104, F.105, C.106, E.107, D.109, L.156 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.25, A:V.33, A:D.109, A:L.156 Hydrogen bonds: A:I.25, A:K.48, A:C.106, A:C.106, A:D.109 pi-Stacking: A:F.103

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain B: Y.37, Q.40, P.79, G.80 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.40, B:G.80 GOL.3: 1 residues within 4Å: Chain B: K.206 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minzel, W. et al., Small Molecules Co-targeting CKI alpha and the Transcriptional Kinases CDK7/9 Control AML in Preclinical Models. Cell (2018)

Release Date

2018-08-29

Peptides

Cyclin-dependent kinase 9: A
Cyclin-T1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cyclin-dependent kinase 9

Cyclin-T1