SMTL ID : 6h1m.1

Neutron structure of Lactobacillus brevis alcohol dehydrogenase

Coordinates

PDB Format Compare

Method

NEUTRON DIFFRACTION 2.15 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 8 residues within 4Å: Chain A: V.147, Q.251 Chain D: V.147, T.249, Q.251 Ligands: MN.2, MG.7, MN.8 6 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: A:Q.251, D:Q.251, H2O.3, H2O.4, H2O.14, H2O.14 MG.3: 8 residues within 4Å: Chain B: V.147, Q.251 Chain C: V.147, T.249, Q.251 Ligands: MN.4, MG.5, MN.6 6 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: B:Q.251, C:Q.251, H2O.7, H2O.7, H2O.10, H2O.11 MG.5: 8 residues within 4Å: Chain B: V.147, T.249, Q.251 Chain C: V.147, Q.251 Ligands: MG.3, MN.4, MN.6 6 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: B:Q.251, C:Q.251, H2O.7, H2O.7, H2O.10, H2O.11 MG.7: 8 residues within 4Å: Chain A: V.147, T.249, Q.251 Chain D: V.147, Q.251 Ligands: MG.1, MN.2, MN.8 6 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: A:Q.251, D:Q.251, H2O.3, H2O.4, H2O.14, H2O.14

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 8 residues within 4Å: Chain A: V.147, Q.251 Chain D: V.147, T.249, Q.251 Ligands: MG.1, MG.7, MN.8 6 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: A:Q.251, D:Q.251, H2O.3, H2O.4, H2O.14, H2O.14 MN.4: 8 residues within 4Å: Chain B: V.147, Q.251 Chain C: V.147, T.249, Q.251 Ligands: MG.3, MG.5, MN.6 6 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: B:Q.251, C:Q.251, H2O.7, H2O.7, H2O.10, H2O.11 MN.6: 8 residues within 4Å: Chain B: V.147, T.249, Q.251 Chain C: V.147, Q.251 Ligands: MG.3, MN.4, MG.5 6 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: B:Q.251, C:Q.251, H2O.7, H2O.7, H2O.10, H2O.11 MN.8: 8 residues within 4Å: Chain A: V.147, T.249, Q.251 Chain D: V.147, Q.251 Ligands: MG.1, MN.2, MG.7 6 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: A:Q.251, D:Q.251, H2O.3, H2O.4, H2O.14, H2O.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hermann, J. et al., Neutron and X-ray crystal structures of Lactobacillus brevis alcohol dehydrogenase reveal new insights into hydrogen-bonding pathways. Acta Crystallogr F Struct Biol Commun (2018)

Release Date

2018-12-12

Peptides

R-specific alcohol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

R-specific alcohol dehydrogenase

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