SMTL ID : 6h2j.1 (1 other biounit)

Crystal structure of the HsdR subunit of the EcoR124I restriction enzyme with the C-terminal domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 19 residues within 4Å: Chain A: K.220, L.270, V.271, M.272, R.273, Q.276, T.309, G.310, S.311, G.312, K.313, T.314, L.315, T.661, G.662, D.664, R.688, R.691 Ligands: MG.2 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:K.220, A:V.271, A:R.273, A:R.273, A:Q.276, A:G.310, A:S.311, A:G.312, A:K.313, A:T.314, A:L.315, A:T.661, A:D.664 Water bridges: A:R.273, A:R.691, A:R.691 Salt bridges: A:K.313, A:K.313, A:R.688, A:R.691, A:R.691, A:R.691 pi-Cation interactions: A:R.273, A:R.273

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.314 Ligands: ATP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.314, H2O.3, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grinkevich, P. et al., Crystal structure of a novel domain of the motor subunit of the Type I restriction enzyme EcoR124 involved in complex assembly and DNA binding. J. Biol. Chem. (2018)

Release Date

2018-08-08

Peptides

Type I restriction enzyme R Protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Type I restriction enzyme R Protein

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