SMTL ID : 6h2r.1

Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase T157V/D181Q/A198L variant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

homo-tetramer

Ligands

6 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 7 residues within 4Å: Chain A: C.119, S.122, H.124, P.125, V.126, C.149, T.151 No protein-ligand interaction detected (PLIP) IPA.2: 9 residues within 4Å: Chain A: P.6, F.38, G.41, T.42, T.43, Y.129, V.156, V.195, L.197 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.6, A:P.6, A:L.197 IPA.5: 10 residues within 4Å: Chain B: P.6, F.38, G.41, T.42, T.43, G.44, Y.129, V.156, V.195, L.197 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:P.6 Hydrogen bonds: B:Y.129 IPA.8: 6 residues within 4Å: Chain C: C.119, S.122, H.124, P.125, V.126, C.149 No protein-ligand interaction detected (PLIP) IPA.9: 9 residues within 4Å: Chain C: P.6, F.38, G.41, T.42, T.43, Y.129, V.156, V.195, L.197 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:P.6 IPA.12: 10 residues within 4Å: Chain D: P.6, F.38, G.41, T.42, T.43, G.44, Y.129, V.156, V.195, L.197 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:P.6, D:P.6, D:V.156, D:L.197 Hydrogen bonds: D:Y.129

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 12 residues within 4Å: Chain A: G.239, S.240, L.241, S.242, P.262, I.263, F.264 Chain B: P.104, R.105, M.106, S.107, H.110 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.240, A:S.240, A:L.241, A:S.242, A:S.242, A:P.262, A:F.264 GOL.6: 14 residues within 4Å: Chain A: Y.103, P.104, R.105, M.106, S.107, H.110 Chain B: F.238, G.239, S.240, L.241, S.242, P.262, I.263, F.264 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.240, B:L.241, B:S.242, B:S.242 Water bridges: B:S.240, A:R.105 GOL.10: 13 residues within 4Å: Chain C: F.238, G.239, S.240, L.241, S.242, P.262, I.263, F.264 Chain D: P.104, R.105, M.106, S.107, H.110 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:S.240, C:L.241, C:S.242, C:S.242, D:H.110 GOL.13: 12 residues within 4Å: Chain C: P.104, R.105, M.106, S.107, H.110 Chain D: G.239, S.240, L.241, S.242, P.262, I.263, F.264 7 PLIP interactions: 5 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:S.240, D:S.240, D:L.241, D:S.242, D:S.242, C:S.107, C:S.107 GOL.14: 7 residues within 4Å: Chain D: C.119, S.122, H.124, P.125, V.126, C.149, T.151 1 PLIP interactions: 1 interactions with chain D Water bridges: D:T.151

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: I.92, V.93, P.123, H.124, P.125 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.92 EDO.15: 4 residues within 4Å: Chain D: S.50, E.52, E.53, E.56 No protein-ligand interaction detected (PLIP)

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.7: 17 residues within 4Å: Chain A: Y.101, Y.102, Y.103, P.104, T.133, A.134, T.135, G.136, K.137 Chain B: Y.102, Y.103, P.104, T.133, A.134, T.135, G.136, K.137 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.135, A:K.137, B:K.137 PGE.11: 19 residues within 4Å: Chain C: Y.101, Y.102, Y.103, P.104, R.105, T.133, A.134, T.135, G.136, K.137 Chain D: Y.101, Y.102, Y.103, P.104, T.133, A.134, T.135, G.136, K.137 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:G.136, C:K.137, D:T.135, D:K.137 Water bridges: C:Y.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crennell, S.J. et al., Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase T157V/D181Q/A198L variant. To Be Published

Release Date

2019-07-31

Peptides

2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase

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