SMTL ID : 6h35.1 (1 other biounit)

Myxococcus xanthus MglA bound to GDP and Pi with mixed inactive and active switch region conformations

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: P.20, L.22, C.23, G.24, K.25, T.26, T.27, R.53, N.141, K.142, D.144, L.145, V.169, A.170, P.171 Ligands: PO4.2 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:L.22, A:C.23, A:G.24, A:K.25, A:T.26, A:T.26, A:T.26, A:T.27, A:T.27, A:R.53, A:N.141, A:K.142, A:K.142, A:A.170 Water bridges: A:K.25, A:K.25, A:T.26, A:R.53 Salt bridges: A:K.25, A:R.53, A:D.144 pi-Cation interactions: A:K.142

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 7 residues within 4Å: Chain A: G.21, T.51, D.52, G.81, Q.82 Ligands: GDP.1, MPD.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.22, A:D.52, A:G.81, A:Q.82

6 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 5 residues within 4Å: Chain A: G.21, G.81, R.109 Ligands: PO4.2, MPD.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.21, A:R.109, A:R.109 MPD.4: 2 residues within 4Å: Chain A: Q.30, L.44 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Q.30, A:L.44 MPD.5: 7 residues within 4Å: Chain A: P.20, V.83, A.112, E.115, S.116, N.119 Ligands: MPD.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:P.20, A:V.83, A:A.112, A:E.115, A:N.119 Water bridges: A:P.80, A:R.89 MPD.6: 4 residues within 4Å: Chain A: E.10, D.58, R.73 Ligands: MPD.7 No protein-ligand interaction detected (PLIP) MPD.7: 6 residues within 4Å: Chain A: E.39, T.40, K.41, G.42, R.73 Ligands: MPD.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.39, A:R.73, A:R.73 MPD.8: 4 residues within 4Å: Chain A: N.34, K.35, T.36, K.41 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Galicia, C. et al., MglA functions as a three-state GTPase to control movement reversals of Myxococcus xanthus. Nat Commun (2019)

Release Date

2019-12-04

Peptides

Mutual gliding-motility protein MglA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mutual gliding-motility protein MglA

Related Entries With Identical Sequence