SMTL ID : 6h3a.1

Crystal structure of the KAP1 RBCC domain in complex with the SMARCAD1 CUE1 domain.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 5.51 Å

Oligo State

hetero-2-2-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.13, C.16, C.36, C.39 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.13, B:C.16, B:C.36, B:C.39 ZN.2: 5 residues within 4Å: Chain B: C.31, H.33, C.65, V.67, C.68 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.31, B:H.33, B:C.65 ZN.3: 4 residues within 4Å: Chain B: C.157, H.160, C.177, C.180 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.157, B:H.160, B:C.177 ZN.4: 5 residues within 4Å: Chain B: C.169, S.171, C.172, H.185, H.188 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.169, B:C.172, B:H.185 ZN.5: 4 residues within 4Å: Chain D: C.157, H.160, C.177, C.180 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.157, D:H.160, D:C.177 ZN.6: 5 residues within 4Å: Chain D: C.169, S.171, C.172, H.185, H.188 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.169, D:C.172, D:H.185 ZN.7: 4 residues within 4Å: Chain D: C.13, C.16, C.36, C.39 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.13, D:C.16, D:C.36, D:C.39 ZN.8: 5 residues within 4Å: Chain D: C.31, H.33, C.65, V.67, C.68 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.33, D:H.33, D:C.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim, M. et al., A Ubiquitin-Binding Domain that Binds a Structural Fold Distinct from that of Ubiquitin. Structure (2019)

Release Date

2019-06-26

Peptides

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1: AC
Transcription intermediary factor 1-beta: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

C
B

B
A

D
F

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1

Transcription intermediary factor 1-beta