SMTL ID : 6h3s.1 (1 other biounit)

Schmallenberg Virus Glycoprotein Gc Head/Stalk Domains

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: Y.38, N.40 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.38 Water bridges: A:Y.38, A:K.212 NAG.2: 1 residues within 4Å: Chain A: N.233 No protein-ligand interaction detected (PLIP)

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 7 residues within 4Å: Chain A: P.45, C.70, L.96, C.97, P.98, L.99, Q.100 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.99, A:Q.100 SO4.4: 6 residues within 4Å: Chain A: R.75, Y.305, S.347, P.348, Y.349, R.412 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.305, A:S.347, A:S.347 Salt bridges: A:R.75, A:R.412 SO4.5: 4 residues within 4Å: Chain A: S.385, S.401, A.402, R.408 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.385, A:S.385, A:A.402 Water bridges: A:A.386, A:A.386, A:A.386, A:N.403 Salt bridges: A:R.408 SO4.6: 2 residues within 4Å: Chain A: H.369, Q.370 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.370 Salt bridges: A:H.369 SO4.7: 1 residues within 4Å: Chain A: R.309 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.309 Salt bridges: A:R.309

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 3 residues within 4Å: Chain A: Y.349, R.412, S.413 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: H.320, R.408, Y.409 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain A: T.42, S.43 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: R.179, R.187 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hellert, J. et al., Orthobunyavirus spike architecture and recognition by neutralizing antibodies. Nat Commun (2019)

Release Date

2019-02-27

Peptides

Envelopment polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Envelopment polyprotein

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