SMTL ID : 6h3t.1 (1 other biounit)

Schmallenberg Virus Glycoprotein Gc Head Domain in Complex with scFv 1C11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.84 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN.1: 8 residues within 4Å: Chain C: E.18, Y.27, N.29, R.192, H.193, G.196, K.197, K.201 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.2: 5 residues within 4Å: Chain A: Y.54, N.55, K.74 Chain C: G.151, N.222 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hellert, J. et al., Orthobunyavirus spike architecture and recognition by neutralizing antibodies. Nat Commun (2019)

Release Date

2019-02-27

Peptides

scFv 1C11 VH: A
scFv 1C11 VL: B
Envelopment polyprotein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
A

scFv 1C11 VH

scFv 1C11 VL

Envelopment polyprotein

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