SMTL ID : 6h3v.1

Bunyamwera Virus Glycoprotein Gc Head Domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-trimer

Ligands

3 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 6 residues within 4Å: Chain A: D.143, N.147, S.151, G.221, L.222, S.223 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.151, A:S.223, A:S.223 NAG-NAG-FUC.3: 6 residues within 4Å: Chain B: D.143, N.147, S.151, G.221, L.222, S.223 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.151, B:S.223, B:S.223 NAG-NAG-FUC.5: 6 residues within 4Å: Chain C: D.143, N.147, S.151, G.221, L.222, S.223 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.151, C:S.223, C:S.223

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: Y.91, P.173 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain B: Y.91, P.173 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain C: Y.91, P.173 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hellert, J. et al., Orthobunyavirus spike architecture and recognition by neutralizing antibodies. Nat Commun (2019)

Release Date

2019-02-27

Peptides

Envelopment polyprotein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Envelopment polyprotein