SMTL ID : 6h6p.1

UbiJ-SCP2 Ubiquinone synthesis protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 9 residues within 4Å: Chain A: L.17, V.18, G.21, I.22, L.25 Chain B: L.17, V.18, G.21, I.22 No protein-ligand interaction detected (PLIP) 1PE.15: 5 residues within 4Å: Chain C: F.55, A.86, S.87, P.90 Ligands: CA.16 No protein-ligand interaction detected (PLIP)

16 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: D.124, E.127 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.124 CA.3: 4 residues within 4Å: Chain A: G.45, D.79 Chain C: G.45, D.79 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: A:G.45, C:G.45, H2O.3 CA.4: 3 residues within 4Å: Chain A: S.58, G.72, E.73 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.73 CA.5: 3 residues within 4Å: Chain A: E.51, S.56, T.57 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.51 CA.6: 3 residues within 4Å: Chain A: Y.85, A.86, S.87 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.87 CA.7: 3 residues within 4Å: Chain A: A.75, G.76, D.77 No protein-ligand interaction detected (PLIP) CA.8: 3 residues within 4Å: Chain A: D.94, Q.96, D.124 No protein-ligand interaction detected (PLIP) CA.9: 3 residues within 4Å: Chain B: E.23 Chain D: E.65, R.66 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.23, B:E.23 CA.10: 3 residues within 4Å: Chain B: G.45, D.79 Chain D: G.45 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:G.45 CA.11: 3 residues within 4Å: Chain B: V.52, F.55, S.56 No protein-ligand interaction detected (PLIP) CA.12: 1 residues within 4Å: Chain B: D.124 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.124, B:D.124 CA.13: 3 residues within 4Å: Chain B: D.94, Q.96, D.124 No protein-ligand interaction detected (PLIP) CA.14: 2 residues within 4Å: Chain B: T.57, S.58 No protein-ligand interaction detected (PLIP) CA.16: 4 residues within 4Å: Chain C: Y.85, A.86, S.87 Ligands: 1PE.15 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:S.87 CA.17: 4 residues within 4Å: Chain D: D.94, Q.96, D.124 Ligands: CA.18 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.124, D:D.124 CA.18: 2 residues within 4Å: Chain D: D.124 Ligands: CA.17 3 PLIP interactions: 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.124, D:D.124, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hajj Chehade, M. et al., A Soluble Metabolon Synthesizes the Isoprenoid Lipid Ubiquinone. Cell Chem Biol (2019)

Release Date

2019-02-13

Peptides

Ubiquinone biosynthesis protein UbiJ: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Ubiquinone biosynthesis protein UbiJ

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