SMTL ID : 6h6r.1

Fragment Derived XIAP inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.73, C.76, H.93, C.100 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.73, A:C.76, A:H.93, A:C.100

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Chain A: F.45 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.45

1 x FUE: 2-[[(2~{R},5~{R})-1-[2-[6-[(4-fluorophenyl)methyl]-3,3-dimethyl-2~{H}-pyrrolo[3,2-b]pyridin-1-yl]-2-oxidanylidene-ethyl]-5-methyl-piperazin-2-yl]methyl]-3~{H}-isoindol-1-one(Non-covalent)

FUE.3: 15 residues within 4Å: Chain A: M.21, L.65, K.70, V.71, K.72, G.79, L.80, T.81, D.82, W.83, K.84, E.87, Q.92, W.96, Y.97 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:K.70, A:W.83, A:Q.92, A:W.96, A:W.96 Hydrogen bonds: A:T.81, A:E.87 Water bridges: A:Y.97 Salt bridges: A:E.87 pi-Cation interactions: A:K.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnson, C.N. et al., A Fragment-Derived Clinical Candidate for Antagonism of X-Linked and Cellular Inhibitor of Apoptosis Proteins: 1-(6-[(4-Fluorophenyl)methyl]-5-(hydroxymethyl)-3,3-dimethyl-1 H,2 H,3 H-pyrrolo[3,2- b]pyridin-1-yl)-2-[(2 R,5 R)-5-methyl-2-([(3R)-3-methylmorpholin-4-yl]methyl)piperazin-1-yl]ethan-1-one (ASTX660). J. Med. Chem. (2018)

Release Date

2018-08-22

Peptides

E3 ubiquitin-protein ligase XIAP: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase XIAP

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