- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: D.148
- Ligands: ATP.1
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.148, H2O.1, H2O.3
MG.4: 2 residues within 4Å:- Chain A: D.71
- Ligands: ATP.1
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.71, H2O.1, H2O.1, H2O.2, H2O.2
MG.13: 2 residues within 4Å:- Chain B: D.148
- Ligands: ATP.12
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.148, H2O.6, H2O.6
MG.15: 2 residues within 4Å:- Chain B: D.71
- Ligands: ATP.12
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:D.71, H2O.4, H2O.4, H2O.5, H2O.6
- 2 x ZN: ZINC ION(Non-covalent)
ZN.3: 4 residues within 4Å:- Chain A: C.191, C.194, C.268, C.273
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:C.191, A:C.194, A:C.268, A:C.273
ZN.14: 4 residues within 4Å:- Chain B: C.191, C.194, C.268, C.273
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.191, B:C.194, B:C.268, B:C.273
- 17 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 7 residues within 4Å:- Chain A: E.55, L.81, F.82
- Chain B: E.55, L.81, F.82
- Ligands: EDO.16
Ligand excluded by PLIPEDO.6: 7 residues within 4Å:- Chain A: G.171, V.172, S.173, G.179, H.180
- Chain C: P.78
- Ligands: EDO.7
Ligand excluded by PLIPEDO.7: 8 residues within 4Å:- Chain A: S.178, G.179, Y.247, G.249, P.258
- Chain C: S.12, P.78
- Ligands: EDO.6
Ligand excluded by PLIPEDO.8: 9 residues within 4Å:- Chain A: G.47, G.48, S.51, N.77, R.80, L.81, F.83, K.92
- Ligands: ATP.1
Ligand excluded by PLIPEDO.9: 4 residues within 4Å:- Chain A: F.256, F.257
- Chain B: F.256, F.257
Ligand excluded by PLIPEDO.10: 4 residues within 4Å:- Chain A: R.271, R.274, K.275, E.278
Ligand excluded by PLIPEDO.16: 7 residues within 4Å:- Chain A: E.55, F.82, Q.84
- Chain B: E.55, F.82, Q.84
- Ligands: EDO.5
Ligand excluded by PLIPEDO.17: 9 residues within 4Å:- Chain B: G.47, G.48, S.51, N.77, R.80, L.81, F.83, K.92
- Ligands: ATP.12
Ligand excluded by PLIPEDO.18: 4 residues within 4Å:- Chain B: Y.114, E.120, N.121, H.124
Ligand excluded by PLIPEDO.19: 2 residues within 4Å:- Chain B: T.117, T.155
Ligand excluded by PLIPEDO.20: 5 residues within 4Å:- Chain B: P.266, R.274, Q.277, E.278, K.281
Ligand excluded by PLIPEDO.21: 7 residues within 4Å:- Chain B: G.171, S.173, S.178, G.179, H.180
- Chain D: P.78
- Ligands: EDO.22
Ligand excluded by PLIPEDO.22: 8 residues within 4Å:- Chain B: S.178, G.179, Y.247, G.249, P.258
- Chain D: S.12, P.78
- Ligands: EDO.21
Ligand excluded by PLIPEDO.23: 5 residues within 4Å:- Chain B: E.151, V.200, I.204, D.205, E.206
Ligand excluded by PLIPEDO.24: 6 residues within 4Å:- Chain B: M.260, S.261
- Chain D: N.52, D.53, G.54, R.75
Ligand excluded by PLIPEDO.25: 3 residues within 4Å:- Chain B: D.269, R.271, R.274
Ligand excluded by PLIPEDO.28: 1 residues within 4Å:- Chain C: D.53
Ligand excluded by PLIP- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.11: 5 residues within 4Å:- Chain A: D.148, R.153, V.172, E.174, A.216
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.153, A:R.153, A:E.174
PEG.26: 4 residues within 4Å:- Chain A: G.1
- Chain B: P.85, H.86, A.88
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:A.88, A:G.1
PEG.27: 10 residues within 4Å:- Chain B: G.47, G.48, V.49, C.146, V.147, D.148, R.153, G.171, V.172
- Ligands: ATP.12
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:V.49, B:R.153, B:R.153, B:V.172
- Water bridges: B:G.50, B:D.148
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soudah, N. et al., An N-Terminal Extension to UBA5 Adenylation Domain Boosts UFM1 Activation: Isoform-Specific Differences in Ubiquitin-like Protein Activation. J.Mol.Biol. (2019)
- Release Date
- 2018-10-31
- Peptides
- Ubiquitin-like modifier-activating enzyme 5: AB
Ubiquitin-fold modifier 1: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
RD
S
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 17 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soudah, N. et al., An N-Terminal Extension to UBA5 Adenylation Domain Boosts UFM1 Activation: Isoform-Specific Differences in Ubiquitin-like Protein Activation. J.Mol.Biol. (2019)
- Release Date
- 2018-10-31
- Peptides
- Ubiquitin-like modifier-activating enzyme 5: AB
Ubiquitin-fold modifier 1: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
RD
S