SMTL ID : 6h7c.1

tRNA guanine transglycosylase H333A mutant apo structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

homo-dimer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: P.252, D.254, K.255 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.254, A:K.255 GOL.2: 5 residues within 4Å: Chain A: A.305, S.308, H.332, R.336 Chain B: R.82 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.82, B:R.82, A:H.332 GOL.3: 6 residues within 4Å: Chain A: P.56, E.57, G.94, W.95, D.96, R.97 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.96, A:D.96, A:R.97 Water bridges: A:E.57 GOL.4: 6 residues within 4Å: Chain A: W.296, E.317, K.360, F.373, F.377, R.380 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.317, A:K.360, A:D.376, A:R.380 Water bridges: A:E.317 GOL.6: 3 residues within 4Å: Chain B: P.252, D.254, K.255 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.254, B:K.255 GOL.7: 5 residues within 4Å: Chain A: R.82 Chain B: A.305, S.308, H.332, R.336 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.82, A:R.82, B:H.332 GOL.8: 6 residues within 4Å: Chain B: P.56, E.57, G.94, W.95, D.96, R.97 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.96, B:D.96, B:R.97 Water bridges: B:E.57 GOL.9: 6 residues within 4Å: Chain B: W.296, E.317, K.360, F.373, F.377, R.380 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.317, B:K.360, B:D.376, B:R.380 Water bridges: B:K.360

2 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain A: C.318, C.320, C.323, H.349 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.318, A:C.320, A:C.323, A:H.349 ZN.10: 4 residues within 4Å: Chain B: C.318, C.320, C.323, H.349 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.318, B:C.320, B:C.323, B:H.349

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, T.X.P. et al., tRNA guanine transglycosylase H333A mutant apo structure. To Be Published

Release Date

2019-08-14

Peptides

Queuine tRNA-ribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Queuine tRNA-ribosyltransferase