SMTL ID : 6h7p.1

Reductive Aminase from Aspergillus terreus in complex with NADPH4, cyclohexanone and allyl amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-dimer

Ligands

2 x FVH: [[(2~{R},3~{S},4~{R},5~{R})-5-[(3~{R})-3-aminocarbonylpiperidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate(Non-covalent)

FVH.1: 27 residues within 4Å: Chain A: G.14, L.15, G.16, A.17, M.18, N.37, R.38, T.39, K.42, C.70, L.71, L.72, A.76, Q.79, T.97, N.98, I.123, A.125, T.126, P.127 Chain B: T.239, S.240, N.241, M.244 Ligands: AYE.2, AYE.3, CYH.4 21 PLIP interactions: 1 Ligand-Ligand interactions, 18 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: ?.4 Hydrogen bonds: A:L.15, A:G.16, A:A.17, A:M.18, A:N.37, A:T.39, A:T.39, A:L.71, A:L.72, A:Q.79, A:N.98, B:T.239, B:N.241 Water bridges: A:G.19, A:R.38, A:R.38 Salt bridges: A:R.38, A:K.42 pi-Cation interactions: A:R.38, A:R.38 FVH.5: 24 residues within 4Å: Chain A: T.239, S.240, N.241, M.244 Chain B: G.14, L.15, G.16, A.17, M.18, N.37, R.38, T.39, K.42, C.70, L.71, L.72, A.76, Q.79, T.97, N.98, I.123, A.125, T.126, P.127 22 PLIP interactions: 20 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:L.15, B:G.16, B:A.17, B:M.18, B:N.37, B:T.39, B:L.71, B:L.72, B:Q.79, B:Q.79, B:N.98, A:T.239, A:N.241 Water bridges: B:G.19, B:R.38, B:R.38, B:K.42, B:K.42 Salt bridges: B:R.38, B:K.42 pi-Cation interactions: B:R.38, B:R.38

2 x AYE: prop-2-en-1-amine(Non-covalent)

AYE.2: 7 residues within 4Å: Chain A: L.96, N.98, G.122, I.123, D.175, L.179 Ligands: FVH.1 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.123 Hydrogen bonds: A:N.98 AYE.3: 9 residues within 4Å: Chain A: L.71, L.72, D.73, N.98 Chain B: M.244, V.247, A.248, N.251 Ligands: FVH.1 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:N.98, B:V.247 Hydrogen bonds: B:M.244, B:A.248

1 x CYH: CYCLOHEXANONE(Non-covalent)

CYH.4: 9 residues within 4Å: Chain A: T.126, M.182, Y.183, F.186 Chain B: M.219, Y.222, S.240, Q.245 Ligands: FVH.1 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.222, A:T.126, A:F.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, M. et al., Structure of Reductive Aminase from Aspergillus terreus. Acs Catalysis (2018)

Release Date

2019-04-03

Peptides

Reductive Aminase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reductive Aminase

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