SMTL ID : 6h81.1

MamM CTD E289H - Nickel form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 2 residues within 4Å: Chain A: H.54, E.58 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.54, H2O.1, H2O.1, H2O.2, H2O.2 NI.5: 2 residues within 4Å: Chain B: H.54, E.58 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:H.54, H2O.2, H2O.2, H2O.3, H2O.3

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: R.10, K.67, I.68, R.69, R.70 Chain B: A.6 8 PLIP interactions: 1 interactions with chain B, 7 interactions with chain A Water bridges: B:R.10, A:R.69, A:R.70 Hydrogen bonds: A:R.69, A:R.70 Salt bridges: A:R.10, A:R.69, A:R.70 SO4.3: 3 residues within 4Å: Chain A: R.70 Chain B: R.70 Ligands: SO4.7 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Water bridges: A:R.70, A:R.70, A:R.70, A:R.70, B:R.70 Salt bridges: A:R.70, B:R.70 SO4.6: 6 residues within 4Å: Chain A: A.6 Chain B: R.10, K.67, I.68, R.69, R.70 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.69, B:R.70 Water bridges: B:R.69, B:R.70, A:R.10 Salt bridges: B:R.10, B:R.69, B:R.70 SO4.7: 3 residues within 4Å: Chain A: R.70 Chain B: R.70 Ligands: SO4.3 7 PLIP interactions: 2 interactions with chain A, 5 interactions with chain B Water bridges: A:R.70, B:R.70, B:R.70, B:R.70, B:R.70 Salt bridges: A:R.70, B:R.70

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 4 residues within 4Å: Chain A: C.65, I.71, E.72, S.73 No protein-ligand interaction detected (PLIP) BME.8: 4 residues within 4Å: Chain B: C.65, I.71, E.72, S.73 1 PLIP interactions: 1 interactions with chain B Water bridges: B:E.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barber-Zucker, S. et al., MMamM CTD E289H - Nickel form. To Be Published

Release Date

2019-08-14

Peptides

Magnetosome protein MamM, Cation efflux protein family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Magnetosome protein MamM, Cation efflux protein family