SMTL ID : 6h87.1

MamM CTD D249N - Zinc form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.26, E.79 Chain B: H.75 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.26, A:E.79, A:E.79, B:H.75 ZN.2: 2 residues within 4Å: Chain A: H.54, E.58 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.54, A:E.58 ZN.3: 3 residues within 4Å: Chain A: H.54, C.57, V.76 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.54, A:C.57, H2O.3, H2O.4 ZN.6: 3 residues within 4Å: Chain A: H.75 Chain B: H.26, E.79 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Metal complexes: A:H.75, B:H.26, B:E.79, B:E.79 ZN.7: 2 residues within 4Å: Chain B: H.54, E.58 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.54, B:E.58 ZN.8: 3 residues within 4Å: Chain B: H.54, C.57, V.76 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.54, B:C.57, H2O.1, H2O.6

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 6 residues within 4Å: Chain A: Q.61, C.65, I.71, E.72, S.73, L.74 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.61, A:L.74, A:L.74 BME.9: 6 residues within 4Å: Chain B: Q.61, C.65, I.71, E.72, S.73, L.74 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.61, B:L.74, B:L.74

2 x CO2: CARBON DIOXIDE(Non-covalent)

CO2.5: 3 residues within 4Å: Chain A: R.22, D.45, N.48 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.22, A:D.45 Water bridges: A:N.48 CO2.10: 3 residues within 4Å: Chain B: R.22, D.45, N.48 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.22 Water bridges: B:N.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barber-Zucker, S. et al., MamM CTD D249N - Zinc form. To Be Published

Release Date

2019-08-14

Peptides

Magnetosome protein MamM, Cation efflux protein family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Magnetosome protein MamM, Cation efflux protein family

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