SMTL ID : 6h8g.1

MamM CTD H264E - Cadmium form 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.10, K.67, I.68, R.69, R.70 Chain B: A.6 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.69, A:R.70 Water bridges: A:R.70, B:R.10 Salt bridges: A:R.10, A:R.70 SO4.2: 3 residues within 4Å: Chain A: R.70 Chain B: R.70 Ligands: SO4.8 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Water bridges: A:R.70, A:R.70, B:R.70, B:R.70 Salt bridges: A:R.70, B:R.70 SO4.7: 6 residues within 4Å: Chain A: A.6 Chain B: R.10, K.67, I.68, R.69, R.70 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.69, B:R.70 Water bridges: B:R.70, A:R.10 Salt bridges: B:R.10, B:R.70 SO4.8: 3 residues within 4Å: Chain A: R.70 Chain B: R.70 Ligands: SO4.2 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Water bridges: A:R.70, A:R.70, B:R.70, B:R.70 Salt bridges: A:R.70, B:R.70

6 x CD: CADMIUM ION(Non-covalent)

CD.3: 2 residues within 4Å: Chain A: E.13, R.17 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.13, A:E.13 CD.4: 1 residues within 4Å: Chain A: H.75 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.75, H2O.1, H2O.2 CD.5: 2 residues within 4Å: Chain A: D.39, H.75 No protein-ligand interaction detected (PLIP) CD.9: 2 residues within 4Å: Chain B: E.13, R.17 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.13, B:E.13 CD.10: 1 residues within 4Å: Chain B: H.75 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.75, H2O.3, H2O.4 CD.11: 2 residues within 4Å: Chain B: D.39, H.75 No protein-ligand interaction detected (PLIP)

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.6: 4 residues within 4Å: Chain A: C.65, I.71, E.72, S.73 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.69 BME.12: 4 residues within 4Å: Chain B: C.65, I.71, E.72, S.73 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barber-Zucker, S. et al., MamM CTD H264E - Cadmium form 1. To Be Published

Release Date

2019-08-14

Peptides

Magnetosome protein MamM, Cation efflux protein family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Magnetosome protein MamM, Cation efflux protein family

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