SMTL ID : 6h8n.2 (1 other biounit)

Structure of peptidoglycan deacetylase PdaC from Bacillus subtilis - mutant D285S

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.26 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 1 residues within 4Å: Chain A: R.203 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.203

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: D.18, H.68, H.72 Ligands: PO4.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.18, A:H.68, A:H.72

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 8 residues within 4Å: Chain A: D.18, H.68, H.72, P.108, Y.109, L.157, H.159 Ligands: ZN.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.109 Water bridges: A:S.17, A:G.110 Salt bridges: A:H.68, A:H.72, A:H.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grifoll-Romero, L. et al., Structure-function relationships underlying the dualN-acetylmuramic andN-acetylglucosamine specificities of the bacterial peptidoglycan deacetylase PdaC. J.Biol.Chem. (2019)

Release Date

2019-11-13

Peptides

Peptidoglycan-N-acetylmuramic acid deacetylase PdaC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peptidoglycan-N-acetylmuramic acid deacetylase PdaC

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