SMTL ID : 6h8t.1 (1 other biounit)

Crystal structure of Papain modify by achiral Ru(II)complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 3 residues within 4Å: Chain A: N.46, Y.82, N.84 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.82 Hydrogen bonds: A:N.46, A:N.84 ACT.3: 2 residues within 4Å: Chain A: N.18, G.20 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.20 ACT.4: 1 residues within 4Å: Chain A: V.157 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.205

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: N.169, K.190 Ligand excluded by PLIP

1 x YXZ: chloro[N,N-di(pyridin-2-yl-kappaN)pentane-1,5-diamine]ruthenium(Non-covalent)

YXZ.5: 7 residues within 4Å: Chain A: C.25, W.26, Y.61, N.64, G.65, G.66, Y.67 2 PLIP interactions: 2 interactions with chain A, Hydrogen bonds: A:G.66 pi-Stacking: A:Y.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cherrier, M.V. et al., Crystallographic evidence for unexpected selective tyrosine hydroxylations in an aerated achiral Ru-papain conjugate. Metallomics (2018)

Release Date

2018-09-12

Peptides

Papain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Papain

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