SMTL ID : 6h90.1

K145A variant of beta-phosphoglucomutase from Lactococcus lactis inhibited by beryllium trifluoride to 1.3 A.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.31 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.8, D.10, E.169, D.170 Ligands: BEF.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.8, A:D.10, A:D.170, H2O.2, H2O.4

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: F.132 Ligands: EDO.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.132

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Covalent)

BEF.3: 6 residues within 4Å: Chain A: D.8, L.9, D.10, S.114, A.115 Ligands: MG.1 No protein-ligand interaction detected (PLIP)

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: T.129, F.132, D.133, A.134, I.135 Ligands: NA.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.133 EDO.5: 6 residues within 4Å: Chain A: S.163, G.182, A.183, L.184, W.216, K.219 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.163 EDO.6: 5 residues within 4Å: Chain A: A.17, E.18, R.38, N.41, K.45 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.38, A:K.45 Water bridges: A:R.38, A:N.41 EDO.7: 5 residues within 4Å: Chain A: Y.93, P.94, V.188, D.203, T.204 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robertson, A.J. et al., Transition state of phospho-enzyme hydrolysis in beta-phosphoglucomutase. To Be Published

Release Date

2020-08-26

Peptides

Beta-phosphoglucomutase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-phosphoglucomutase