SMTL ID : 6h94.1

T16A variant of beta-phosphoglucomutase from Lactococcus lactis with phosphate and TRIS bound in an open conformer to 1.5 A.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.8, D.10, E.169, D.170 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.8, A:D.10, A:E.169, A:D.170, H2O.5

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: M.1, W.216 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.1, A:W.216 Water bridges: A:K.3 EDO.3: 6 residues within 4Å: Chain A: S.163, G.182, A.183, L.184, W.216, K.219 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.163, A:K.219 EDO.4: 3 residues within 4Å: Chain A: K.3, K.109, V.160 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.159

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 4 residues within 4Å: Chain A: H.20, R.49, K.117 Ligands: TRS.6 11 PLIP interactions: 11 interactions with chain A Water bridges: A:H.20, A:R.49, A:R.49, A:R.49, A:K.76, A:K.117, A:N.118 Salt bridges: A:H.20, A:R.49, A:K.76, A:K.117

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.6: 9 residues within 4Å: Chain A: H.20, W.24, L.44, V.47, R.49, S.52, K.76, K.117 Ligands: PO4.5 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:V.47, A:S.52, A:S.52, A:K.117, A:K.117 Water bridges: A:G.46, A:G.46, A:R.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robertson, A.J. et al., Transition state of phospho-enzyme hydrolysis in beta-phosphoglucomutase. To Be Published

Release Date

2020-08-26

Peptides

Beta-phosphoglucomutase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-phosphoglucomutase

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