- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- hetero-2-2-1-mer
- Ligands
- 11 x SO4: SULFATE ION(Non-functional Binders)
- 2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
GTP.3: 24 residues within 4Å:- Chain A: G.10, Q.11, A.12, Q.15, D.62, D.91, A.92, A.93, N.94, S.133, G.136, G.137, T.138, G.139, I.164, V.170, T.172, E.176, N.199, Y.217, N.221, I.224
- Chain B: K.252
- Ligands: MG.4
25 PLIP interactions:23 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:Q.11, A:Q.11, A:Q.11, A:A.12, A:A.92, A:N.94, A:N.94, A:S.133, A:G.137, A:T.138, A:G.139, A:V.170, A:E.176, A:N.199, A:N.199, A:N.221, A:N.221
- Water bridges: A:T.138, A:T.138, A:T.172, A:T.172, B:K.252
- pi-Stacking: A:Y.217, A:Y.217
- Salt bridges: B:K.252
GTP.11: 23 residues within 4Å:- Chain C: G.10, Q.11, A.12, Q.15, D.62, D.91, A.92, A.93, N.94, S.133, G.136, G.137, T.138, G.139, I.164, V.170, T.172, E.176, N.199, Y.217, N.221, I.224
- Ligands: MG.12
24 PLIP interactions:23 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:Q.11, C:Q.11, C:Q.11, C:A.12, C:D.91, C:A.92, C:N.94, C:N.94, C:S.133, C:G.137, C:T.138, C:G.139, C:V.170, C:E.176, C:N.199, C:N.199, C:N.221, C:N.221
- Water bridges: C:D.91, C:T.138, C:T.138, D:K.252
- pi-Stacking: C:Y.217, C:Y.217
- 2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.8: 18 residues within 4Å:- Chain B: G.10, Q.11, C.12, Q.15, S.138, G.140, G.141, G.142, T.143, G.144, V.169, P.171, V.175, D.177, E.181, N.204, Y.222, N.226
19 PLIP interactions:19 interactions with chain B- Hydrogen bonds: B:Q.11, B:Q.11, B:Q.11, B:C.12, B:S.138, B:G.142, B:T.143, B:T.143, B:G.144, B:V.175, B:E.181, B:N.204, B:N.204, B:N.226, B:N.226
- Water bridges: B:S.145, B:S.145
- pi-Stacking: B:Y.222, B:Y.222
GDP.17: 18 residues within 4Å:- Chain D: G.10, Q.11, C.12, Q.15, N.99, S.138, G.141, G.142, T.143, G.144, V.169, P.171, V.175, D.177, E.181, N.204, Y.222, N.226
21 PLIP interactions:21 interactions with chain D- Hydrogen bonds: D:Q.11, D:Q.11, D:C.12, D:S.138, D:G.142, D:T.143, D:T.143, D:G.144, D:V.175, D:E.181, D:N.204, D:N.204, D:N.226, D:N.226
- Water bridges: D:G.13, D:N.99, D:N.99, D:S.138, D:S.145
- pi-Stacking: D:Y.222, D:Y.222
- 2 x FWH: 9-methyl-3-[1-(2-methylquinolin-4-yl)ethenyl]carbazole(Non-covalent)
FWH.9: 26 residues within 4Å:- Chain A: S.171, T.172, A.173, V.174
- Chain B: V.236, C.239, L.240, L.246, A.248, D.249, K.252, L.253, N.256, M.257, T.312, V.313, A.314, T.315, I.316, N.347, N.348, V.349, K.350, T.351, A.352, I.368
12 PLIP interactions:11 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:L.246, B:L.246, B:A.248, B:L.253, B:N.256, B:A.314, B:I.316, B:K.350, B:K.350, B:K.350, B:A.352, A:V.174
FWH.18: 26 residues within 4Å:- Chain C: S.171, T.172, A.173, V.174
- Chain D: V.236, C.239, L.240, L.246, A.248, D.249, K.252, L.253, N.256, M.257, T.312, V.313, A.314, T.315, I.316, N.347, N.348, V.349, K.350, T.351, A.352, I.368
11 PLIP interactions:10 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:L.246, D:A.248, D:L.253, D:N.256, D:A.314, D:I.316, D:K.350, D:K.350, D:K.350, D:A.352, C:V.174
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Naret, T. et al., 1,1-Diheterocyclic Ethylenes Derived from Quinaldine and Carbazole as New Tubulin-Polymerization Inhibitors: Synthesis, Metabolism, and Biological Evaluation. J. Med. Chem. (2019)
- Release Date
- 2018-12-19
- Peptides
- Tubulin alpha chain: AC
Tubulin beta chain: BD
Stathmin-4: E - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
DE
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- hetero-2-2-1-mer
- Ligands
- 11 x SO4: SULFATE ION(Non-functional Binders)
- 2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x FWH: 9-methyl-3-[1-(2-methylquinolin-4-yl)ethenyl]carbazole(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Naret, T. et al., 1,1-Diheterocyclic Ethylenes Derived from Quinaldine and Carbazole as New Tubulin-Polymerization Inhibitors: Synthesis, Metabolism, and Biological Evaluation. J. Med. Chem. (2019)
- Release Date
- 2018-12-19
- Peptides
- Tubulin alpha chain: AC
Tubulin beta chain: BD
Stathmin-4: E - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
DE
E