SMTL ID : 6h9j.1

Factor Inhibiting HIF (FIH) in complex with zinc, NOG and TRPV3 (229-255)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

hetero-2-2-mer

Ligands

2 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.1: 13 residues within 4Å: Chain A: Y.134, L.177, T.185, H.188, D.190, N.194, F.196, K.203, H.268, I.270, N.283, W.285 Ligands: ZN.9 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.185, A:N.194, A:N.283 Salt bridges: A:K.203, A:H.268 OGA.10: 13 residues within 4Å: Chain C: Y.134, L.177, T.185, H.188, D.190, N.194, F.196, K.203, H.268, I.270, N.283, W.285 Ligands: ZN.18 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:Y.134, C:T.185, C:T.185, C:D.190, C:N.194, C:N.283 Water bridges: C:D.190 Salt bridges: C:K.203, C:H.268

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: K.88, Y.219, S.229, Q.230, V.231, D.232 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.219, A:Y.219 Water bridges: A:S.229, A:V.231, A:D.232 GOL.3: 5 residues within 4Å: Chain A: E.48, M.264, Y.265, A.289, H.302 5 PLIP interactions: 5 interactions with chain A Water bridges: A:E.48, A:Q.193, A:Q.193, A:M.264, A:T.291 GOL.4: 5 residues within 4Å: Chain A: R.22, H.87, R.132, L.274 Ligands: SO4.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.22, A:R.22, A:H.87, A:H.87 GOL.11: 6 residues within 4Å: Chain C: K.88, Y.219, S.229, Q.230, V.231, D.232 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Y.219 Water bridges: C:S.229, C:V.231, C:D.232 GOL.12: 5 residues within 4Å: Chain C: E.48, M.264, Y.265, A.289, H.302 5 PLIP interactions: 5 interactions with chain C Water bridges: C:E.48, C:Q.193, C:Q.193, C:M.264, C:T.291 GOL.13: 5 residues within 4Å: Chain C: R.22, H.87, R.132, L.274 Ligands: SO4.17 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.22, C:R.22, C:H.87

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: R.127, G.129, E.130, E.131 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.130, A:E.131 Salt bridges: A:R.127 SO4.6: 2 residues within 4Å: Chain A: K.300, A.301 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.301 Water bridges: A:H.302 SO4.7: 1 residues within 4Å: Chain A: R.109 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.109 SO4.8: 6 residues within 4Å: Chain A: R.132, E.181, G.182, L.274, N.275 Ligands: GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.181, A:E.181, A:N.275 Salt bridges: A:R.132 SO4.14: 4 residues within 4Å: Chain C: R.127, G.129, E.130, E.131 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.130, C:E.131 Salt bridges: C:R.127 SO4.15: 2 residues within 4Å: Chain C: K.300, A.301 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.211, C:A.301 Water bridges: C:H.302 SO4.16: 1 residues within 4Å: Chain C: R.109 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.109 SO4.17: 6 residues within 4Å: Chain C: R.132, E.181, G.182, L.274, N.275 Ligands: GOL.13 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.181, C:N.275 Salt bridges: C:R.132

2 x ZN: ZINC ION(Non-covalent)

ZN.9: 4 residues within 4Å: Chain A: H.188, D.190, H.268 Ligands: OGA.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.188, A:D.190, A:H.268, H2O.1 ZN.18: 4 residues within 4Å: Chain C: H.188, D.190, H.268 Ligands: OGA.10 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.188, C:D.190, C:H.268, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leissing, T.M. et al., Factor Inhibiting HIF (FIH) in complex with zinc, NOG and TRPV3 (229-255). To Be Published

Release Date

2019-08-14

Peptides

Hypoxia-inducible factor 1-alpha inhibitor: AC
Transient receptor potential cation channel subfamily V member 3: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
D

D
D

Hypoxia-inducible factor 1-alpha inhibitor

Transient receptor potential cation channel subfamily V member 3