SMTL ID : 6h9s.1

Crystal dimeric structure of Petrotoga mobilis lactate dehydrogenase with NADH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 23 residues within 4Å: Chain A: I.6, G.7, T.8, G.9, R.10, V.11, Y.31, D.32, L.33, T.74, A.75, G.76, N.92, I.95, I.99, I.115, T.116, N.117, V.119, T.140, H.172, T.228, I.232 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:I.115, A:T.228, A:I.232 Hydrogen bonds: A:R.10, A:V.11, A:D.32, A:L.33, A:G.76, A:N.92, A:N.117, A:N.117, A:H.172 Water bridges: A:G.9, A:G.12, A:Y.62, A:A.77, A:I.95, A:T.140 Salt bridges: A:R.10, A:R.10 NAD.2: 24 residues within 4Å: Chain B: I.6, G.7, T.8, G.9, R.10, V.11, Y.31, D.32, L.33, T.74, A.75, G.76, A.77, A.78, I.95, I.99, I.115, T.116, N.117, V.119, T.140, H.172, T.228, I.232 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:I.115, B:T.228, B:I.232 Hydrogen bonds: B:R.10, B:V.11, B:D.32, B:L.33, B:G.76, B:N.92, B:N.117, B:N.117, B:T.140, B:H.172 Water bridges: B:G.9, B:G.12 Salt bridges: B:R.10, B:R.10 NAD.3: 23 residues within 4Å: Chain C: I.6, G.7, T.8, G.9, R.10, V.11, Y.31, D.32, L.33, T.74, A.75, G.76, N.92, I.95, I.99, I.115, T.116, N.117, V.119, T.140, H.172, T.228, I.232 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:I.115, C:T.228, C:I.232 Hydrogen bonds: C:R.10, C:V.11, C:D.32, C:L.33, C:G.76, C:N.92, C:N.117, C:N.117, C:T.140, C:H.172 Water bridges: C:G.9, C:G.12, C:A.77, C:I.95 Salt bridges: C:R.10, C:R.10 NAD.4: 24 residues within 4Å: Chain D: I.6, G.7, T.8, G.9, R.10, V.11, Y.31, D.32, L.33, T.74, A.75, G.76, A.77, A.78, I.95, I.99, I.115, T.116, N.117, V.119, T.140, H.172, T.228, I.232 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:I.115, D:T.228, D:I.232 Hydrogen bonds: D:R.10, D:V.11, D:D.32, D:L.33, D:G.76, D:N.92, D:N.117, D:N.117, D:H.172 Water bridges: D:G.9, D:G.12, D:Y.31, D:T.140 Salt bridges: D:R.10, D:R.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roche, J. et al., Structure of Petrotoga mobilis lactate dehydrogenase at 1.9 Angstrom resolution. To Be Published

Release Date

2018-08-22

Peptides

L-lactate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

L-lactate dehydrogenase