- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SSA: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE(Non-covalent)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 8 residues within 4Å:- Chain A: M.165, H.173, M.284, Q.286, F.287, D.288, G.396
- Chain B: Y.194
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.288, A:D.288, A:G.396
EDO.3: 6 residues within 4Å:- Chain A: N.200, Q.201, D.228, S.229, S.230, N.231
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.201, A:D.228, A:N.231
- Water bridges: A:D.202, A:S.230
EDO.4: 5 residues within 4Å:- Chain A: Q.209, T.237, E.239, R.268
- Ligands: SSA.1
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.209
EDO.9: 8 residues within 4Å:- Chain A: Y.194
- Chain B: M.165, H.173, M.284, Q.286, F.287, D.288, G.396
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.288, B:D.288, B:G.396
EDO.10: 6 residues within 4Å:- Chain B: N.200, Q.201, D.228, S.229, S.230, N.231
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Q.201, B:D.228, B:N.231
- Water bridges: B:D.202, B:S.230
EDO.11: 5 residues within 4Å:- Chain B: Q.209, T.237, E.239, R.268
- Ligands: SSA.8
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.209
- 6 x CA: CALCIUM ION(Non-covalent)
CA.5: 4 residues within 4Å:- Chain A: D.342, E.355, S.358
- Ligands: SSA.1
No protein-ligand interaction detected (PLIP)CA.6: 4 residues within 4Å:- Chain A: E.239, S.336, V.362, N.389
No protein-ligand interaction detected (PLIP)CA.7: 1 residues within 4Å:- Chain A: D.254
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.254, H2O.5, H2O.8
CA.12: 4 residues within 4Å:- Chain B: D.342, E.355, S.358
- Ligands: SSA.8
No protein-ligand interaction detected (PLIP)CA.13: 4 residues within 4Å:- Chain B: E.239, S.336, V.362, N.389
No protein-ligand interaction detected (PLIP)CA.14: 1 residues within 4Å:- Chain B: D.254
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.254, H2O.12, H2O.15
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- De Ruysscher, D. et al., Acylated sulfonamide adenosines as potent inhibitors of the adenylate-forming enzyme superfamily. Eur.J.Med.Chem. (2019)
- Release Date
- 2019-05-15
- Peptides
- Serine--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SSA: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE(Non-covalent)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 6 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- De Ruysscher, D. et al., Acylated sulfonamide adenosines as potent inhibitors of the adenylate-forming enzyme superfamily. Eur.J.Med.Chem. (2019)
- Release Date
- 2019-05-15
- Peptides
- Serine--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A