SMTL ID : 6ha9.1 (1 other biounit)

Structure of an endo-Xyloglucanase from Cellvibrio japonicus complexed with XXXG(2F)-beta-DNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NFG- BGC- BGC- BGC- XYS- XYS: beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-2,4-dinitrophenyl 2-deoxy-2-fluoro-beta-D-glucopyranoside

NFG-BGC-BGC-BGC-XYS-XYS.1: 18 residues within 4Å: Chain A: N.60, W.71, H.136, W.137, N.182, A.183, V.224, T.225, D.226, K.229, H.251, Y.253, Y.256, L.260, R.262, E.318, W.360, N.362 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.224 Hydrogen bonds: A:T.225, A:T.225, A:H.251 Water bridges: A:N.182

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: K.151, S.197 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.197, A:S.197

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: S.110, A.111, A.112 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.111, A:A.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jain, N. et al., Synthesis and application of a highly branched, mechanism-based 2-deoxy-2-fluoro-oligosaccharide inhibitor of endo-xyloglucanases. Org. Biomol. Chem. (2018)

Release Date

2018-10-03

Peptides

Cellulase, putative, cel5D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cellulase, putative, cel5D

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