SMTL ID : 6hau.1

KSHV PAN RNA Mta-response element fragment complexed with the globular domain of herpesvirus saimiri ORF57

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.149, H.241, C.245, C.250 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.149, A:H.241, A:C.245, A:C.250 ZN.2: 5 residues within 4Å: Chain B: C.149, H.241, C.245, S.247, C.250 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.149, B:H.241, B:C.245, B:C.250

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 6 residues within 4Å: Chain A: L.12 Chain B: Y.197, E.224, Y.225, R.226, D.229 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:R.226, A:L.12 Hydrogen bonds: B:R.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tunnicliffe, R.B. et al., Structural identification of conserved RNA binding sites in herpesvirus ORF57 homologs: implications for PAN RNA recognition. Nucleic Acids Res. (2019)

Release Date

2018-11-21

Peptides

mRNA export factor ICP27 homolog: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

mRNA export factor ICP27 homolog

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