SMTL ID : 6hc6.2 (2 other biounits)

The structure of BSAP, a zinc aminopeptidase from Bacillus subtilis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.250, D.262, D.323 Ligands: ZN.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.250, A:D.262, A:D.323, H2O.1, H2O.11 ZN.2: 6 residues within 4Å: Chain A: D.262, E.295, Y.400, H.401, E.452 Ligands: ZN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.262, A:E.295, A:H.401, A:E.452, H2O.1

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: H.241, K.311, R.315 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.311 Water bridges: A:K.311, A:K.311 Salt bridges: A:K.311, A:R.315 ACT.4: 3 residues within 4Å: Chain A: P.42, K.44, R.275 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.42 Salt bridges: A:K.44, A:R.275

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: W.348, R.352 Ligands: GOL.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.348, A:R.352 GOL.6: 5 residues within 4Å: Chain A: G.342, Q.343, S.344, L.365 Ligands: GOL.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.344 Water bridges: A:S.344

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alhadeff, R. et al., To be published. To Be Published

Release Date

2019-08-28

Peptides

Aminopeptidase YwaD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Aminopeptidase YwaD

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