SMTL ID : 6hd0.1

Common mode of remodeling AAA ATPases p97/CDC48 by their disassembly cofactors ASPL/PUX1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.73 Å

Oligo State

hetero-6-6-mer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: D.205, I.206, G.207, G.248, T.249, G.250, K.251, T.252, L.253, H.384, A.409 Chain G: R.359, F.360 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain G Hydrogen bonds: A:G.207, A:G.207, A:G.248, A:K.251, A:T.252, A:L.253 Salt bridges: G:R.359 ADP.2: 15 residues within 4Å: Chain C: D.205, I.206, G.207, G.248, T.249, G.250, K.251, T.252, L.253, I.380, H.384, G.408, A.409 Chain D: R.359, F.360 8 PLIP interactions: 7 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:G.207, C:G.207, C:G.248, C:G.250, C:K.251, C:T.252, C:L.253 Salt bridges: D:R.359 ADP.3: 14 residues within 4Å: Chain D: D.205, I.206, G.207, G.248, T.249, G.250, L.253, I.380, H.384, G.408, A.409, A.412 Chain E: R.359, F.360 6 PLIP interactions: 4 interactions with chain D, 2 interactions with chain E Hydrogen bonds: D:G.207, D:G.207, D:G.248, D:G.250 Salt bridges: E:R.359, E:R.359 ADP.4: 14 residues within 4Å: Chain E: D.205, I.206, G.207, G.248, T.249, G.250, K.251, T.252, L.253, H.384, G.408, A.409 Chain F: R.359, F.360 11 PLIP interactions: 4 interactions with chain F, 7 interactions with chain E Hydrogen bonds: F:K.236, F:K.236, F:G.361, E:G.207, E:G.207, E:G.248, E:G.250, E:K.251, E:T.252, E:L.253 Salt bridges: F:R.359 ADP.5: 12 residues within 4Å: Chain A: R.359 Chain F: G.207, G.248, T.249, G.250, K.251, T.252, D.304, I.380, H.384, G.408, A.409 9 PLIP interactions: 8 interactions with chain F, 1 interactions with chain A Hydrogen bonds: F:G.207, F:G.207, F:G.248, F:K.251, F:T.252, F:T.252, F:T.252, F:L.253 Salt bridges: A:R.359 ADP.6: 15 residues within 4Å: Chain C: K.236, R.359, F.360 Chain G: D.205, I.206, G.207, T.249, G.250, K.251, T.252, L.253, I.380, H.384, G.408, A.409 8 PLIP interactions: 3 interactions with chain C, 5 interactions with chain G Hydrogen bonds: C:K.236, C:K.236, G:G.207, G:G.207, G:G.250, G:K.251, G:L.253 Salt bridges: C:R.359

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banchenko, S. et al., Common Mode of Remodeling AAA ATPases p97/CDC48 by Their Disassembling Cofactors ASPL/PUX1. Structure (2019)

Release Date

2019-08-28

Peptides

Transitional endoplasmic reticulum ATPase: ACDEFG
Plant UBX domain-containing protein 1: BHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
T

D
U

E
V

F
A

G
C

B
G

H
D

I
E

J
F

K
K

L
I

Transitional endoplasmic reticulum ATPase

Plant UBX domain-containing protein 1

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