SMTL ID : 6hdk.1

R49A variant of beta-phosphoglucomutase from Lactococcus lactis complexed with aluminium tetrafluoride and beta-G6P to 1.2 A.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.24 Å

Oligo State

monomer

Ligands

1 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)

ALF.1: 11 residues within 4Å: Chain A: D.8, L.9, D.10, G.46, A.113, S.114, A.115, K.145, E.169 Ligands: MG.7, BG6.8 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.8

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: E.124, N.127 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.127 Water bridges: A:N.127 NA.3: 3 residues within 4Å: Chain A: T.129, G.130, F.132 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.132, A:F.132

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: Y.93, D.203, T.204 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.204, A:T.204 EDO.5: 5 residues within 4Å: Chain A: E.18, F.21, R.38, N.41, K.45 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.38, A:K.45 Water bridges: A:D.15, A:N.41, A:K.45, A:K.45 EDO.6: 6 residues within 4Å: Chain A: S.163, G.182, A.183, L.184, W.216, K.219 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.163

1 x MG: MAGNESIUM ION(Non-covalent)

MG.7: 6 residues within 4Å: Chain A: D.8, D.10, E.169, D.170 Ligands: ALF.1, BG6.8 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.8, A:D.10, A:D.170, H2O.1, H2O.2

1 x BG6: 6-O-phosphono-beta-D-glucopyranose(Non-covalent)

BG6.8: 18 residues within 4Å: Chain A: D.8, D.10, H.20, L.44, K.45, G.46, V.47, S.48, A.49, S.52, K.76, S.114, A.115, S.116, K.117, N.118 Ligands: ALF.1, MG.7 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:D.10, A:D.10, A:L.44, A:G.46, A:S.52, A:S.52, A:K.117, A:N.118, A:N.118 Water bridges: A:H.20, A:H.20, A:K.76, A:K.76, A:K.117, A:K.117, A:K.117, A:K.117 Salt bridges: A:H.20, A:H.20, A:K.76, A:K.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robertson, A.J. et al., Transition state of phospho-enzyme hydrolysis in beta-phosphoglucomutase. To Be Published

Release Date

2020-08-26

Peptides

Beta-phosphoglucomutase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-phosphoglucomutase

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