SMTL ID : 6hdu.3 (3 other biounits)

Crystal structure of human Rab38 in complex with GTP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 24 residues within 4Å: Chain A: D.20, L.21, G.22, V.23, G.24, K.25, T.26, S.27, F.37, S.38, S.39, Y.41, A.43, T.44, A.70, G.71, N.130, K.131, D.133, Q.134, S.162, A.163, K.164 Ligands: MG.2 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:G.22, A:V.23, A:G.24, A:K.25, A:T.26, A:S.27, A:S.27, A:S.38, A:Y.41, A:R.42, A:T.44, A:G.71, A:N.130, A:K.131, A:K.131, A:Q.134, A:A.163, A:K.164 Water bridges: A:T.44, A:T.44, A:T.44 Salt bridges: A:K.25, A:K.25, A:D.133 pi-Stacking: A:F.37, A:F.37

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.26, T.44, D.68 Ligands: GTP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.26, A:T.44, H2O.1, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McGrath, E. et al., LRRK2 binds to the Rab32 subfamily in a GTP-dependent mannerviaits armadillo domain. Small GTPases (2019)

Release Date

2019-08-28

Peptides

Ras-related protein Rab-38: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Ras-related protein Rab-38

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