SMTL ID : 6hfp.1

Human dihydroorotase mutant F1563T co-crystallized with carbamoyl aspartate at pH 7.0

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: H.18, K.103, Y.105, H.137, H.161 Ligands: ZN.2, DOR.5 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.137, A:H.161, H2O.7 ZN.2: 9 residues within 4Å: Chain A: H.18, H.20, M.50, K.103, Y.105, H.161, D.233 Ligands: ZN.1, DOR.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.18, A:H.20, A:D.233, H2O.7 ZN.3: 4 residues within 4Å: Chain A: H.18, M.50, C.160, E.184 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.18, A:C.160, A:E.184, H2O.6 ZN.4: 1 residues within 4Å: Chain A: H.281 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.281, H2O.13

1 x DOR: (4S)-2,6-DIOXOHEXAHYDROPYRIMIDINE-4-CARBOXYLIC ACID(Non-covalent)

DOR.5: 16 residues within 4Å: Chain A: H.20, R.22, N.52, K.103, Y.105, H.137, V.207, R.208, D.233, A.235, H.237, P.249, G.250 Ligands: ZN.1, ZN.2, FMT.9 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.52, A:N.52, A:R.208, A:R.208, A:P.249 Water bridges: A:R.22 Salt bridges: A:H.20, A:R.22, A:H.237

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.6: 8 residues within 4Å: Chain A: P.133, I.134, V.135, R.155, S.156, V.157, H.158, T.182 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.134, A:I.134, A:R.155 Water bridges: A:S.156, A:S.156, A:T.182 FMT.7: 3 residues within 4Å: Chain A: H.281, R.284, R.285 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.281, A:R.284 FMT.8: 4 residues within 4Å: Chain A: R.10, P.12, T.295, Y.296 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.10, A:R.10 Water bridges: A:G.13, A:T.295, A:T.295 FMT.9: 7 residues within 4Å: Chain A: N.52, Y.105, E.108, T.109, T.110, L.113 Ligands: DOR.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.52, A:E.108, A:T.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Del Cano-Ochoa, F. et al., Characterization of the catalytic flexible loop in the dihydroorotase domain of the human multi-enzymatic protein CAD. J. Biol. Chem. (2018)

Release Date

2018-10-24

Peptides

CAD protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CAD protein

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