SMTL ID : 6hfv.2 (1 other biounit)

Mycobacterium tuberculosis DprE1 in complex with CMP2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 34 residues within 4Å: Chain A: W.30, I.66, A.67, R.68, G.69, L.70, G.71, R.72, S.73, Y.74, N.77, A.78, M.88, A.108, P.130, G.131, T.132, V.135, T.136, G.138, G.139, A.142, C.143, I.145, H.146, N.192, G.193, G.196, I.197, I.198, Y.429, A.431, K.432 Ligands: G1T.2 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:W.30, A:R.72, A:Y.74, A:T.132 Hydrogen bonds: A:A.67, A:G.69, A:L.70, A:G.71, A:R.72, A:S.73, A:N.77, A:G.131, A:T.136, A:T.136, A:H.146, A:H.146, A:N.192, A:I.198, A:I.198, A:Y.429 Water bridges: A:G.138, A:G.138, A:Q.350, A:Q.350 pi-Cation interactions: A:K.432

1 x G1T: 8-(oxidanylamino)-2-piperidin-1-yl-6-(trifluoromethyl)-1,3-benzothiazin-4-one(Covalent)

G1T.2: 14 residues within 4Å: Chain A: G.131, H.146, G.147, K.148, S.242, L.331, Q.350, V.379, K.381, F.383, N.399, C.401, K.432 Ligands: FAD.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.331, A:V.379 Water bridges: A:Q.350 Halogen bonds: A:N.399

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.3: 6 residues within 4Å: Chain A: K.148, S.242, A.243, W.244, S.260, P.330 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.242 pi-Stacking: A:W.244, A:W.244

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richter, A. et al., Novel insight into the reaction of nitro, nitroso and hydroxylamino benzothiazinones and of benzoxacinones with Mycobacterium tuberculosis DprE1. Sci Rep (2018)

Release Date

2018-09-19

Peptides

Decaprenylphosphoryl-beta-D-ribose oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Decaprenylphosphoryl-beta-D-ribose oxidase

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