SMTL ID : 6hg6.1

Clostridium beijerinckii aldo-keto reductase Cbei_3974 with NADPH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 26 residues within 4Å: Chain A: G.31, L.32, W.33, N.35, D.61, Y.66, K.97, H.138, S.168, N.169, Q.193, F.222, S.223, P.224, L.225, T.231, K.233, A.279, L.296, I.297, G.298, A.299, S.300, Q.304, E.307, N.308 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:W.33, A:F.222, A:F.222, A:F.222 Hydrogen bonds: A:L.32, A:W.33, A:N.35, A:D.61, A:D.61, A:S.168, A:N.169, A:N.169, A:Q.193, A:S.223, A:L.225, A:G.298, A:Q.304, A:E.307, A:N.308 Water bridges: A:G.31, A:H.34, A:N.35, A:Y.66, A:Y.66, A:S.223, A:S.223, A:G.228, A:S.300, A:S.300 Salt bridges: A:K.233

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: G.105, P.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.105 EDO.3: 2 residues within 4Å: Chain A: M.140, P.142 1 PLIP interactions: 1 interactions with chain A Water bridges: A:M.140 EDO.4: 7 residues within 4Å: Chain A: G.37, S.38, A.40, Y.42, M.45, N.76, R.79 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.38, A:N.76, A:R.79 EDO.5: 8 residues within 4Å: Chain A: W.33, H.34, N.35, F.36, G.37, A.40, G.67, P.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.35, A:G.37 Water bridges: A:F.36, A:N.39 EDO.6: 4 residues within 4Å: Chain A: A.86, R.89, L.129, E.130 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.130 Water bridges: A:G.128 EDO.7: 5 residues within 4Å: Chain A: E.204, N.205, N.206, G.207, R.210 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.205, A:G.207, A:R.210 EDO.8: 1 residues within 4Å: Chain A: K.158 No protein-ligand interaction detected (PLIP) EDO.9: 2 residues within 4Å: Chain A: D.121, K.161 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.121 Water bridges: A:D.121, A:K.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scott, A.F. et al., Crystal Structure and Biophysical Analysis of Furfural-Detoxifying Aldehyde Reductase from Clostridium beijerinckii. Appl.Environ.Microbiol. (2019)

Release Date

2019-05-29

Peptides

L-glyceraldehyde 3-phosphate reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L-glyceraldehyde 3-phosphate reductase