SMTL ID : 6hh2.1

Rab29 small GTPase bound to GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: D.18, A.19, A.20, V.21, G.22, K.23, T.24, S.25, E.71, N.128, K.129, D.131, L.132, S.158, V.159, K.160 Ligands: MG.2 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:A.20, A:V.21, A:G.22, A:K.23, A:T.24, A:T.24, A:S.25, A:S.25, A:E.71, A:N.128, A:K.129, A:K.129, A:V.159, A:K.160 Water bridges: A:K.23, A:T.24, A:S.25, A:K.160 Salt bridges: A:K.23, A:D.131

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.24, E.71 Ligands: GDP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.24, H2O.1, H2O.2, H2O.2, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McGrath, E. et al., LRRK2 binds to the Rab32 subfamily in a GTP-dependent mannerviaits armadillo domain. Small GTPases (2019)

Release Date

2019-09-11

Peptides

Ras-related protein Rab-7L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related protein Rab-7L1