SMTL ID : 6hhs.1 (3 other biounits)

MamM CTD E289D - Cadmium form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

6 x CD: CADMIUM ION(Non-covalent)

CD.1: 2 residues within 4Å: Chain A: H.26 Chain B: H.75 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.26, B:H.75 CD.2: 1 residues within 4Å: Chain A: D.35 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.35, A:D.35, H2O.1 CD.3: 2 residues within 4Å: Chain A: D.35, E.72 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.72, A:E.72 CD.4: 2 residues within 4Å: Chain A: H.75 Chain B: H.26 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:H.26, A:H.75, H2O.2 CD.5: 2 residues within 4Å: Chain A: D.79 Chain B: H.54 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:D.79, A:D.79, B:H.54, H2O.1 CD.9: 1 residues within 4Å: Chain B: D.35 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.35, B:D.35, H2O.2

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 4 residues within 4Å: Chain A: R.10, I.68, R.69, R.70 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.69, A:R.70 Water bridges: A:R.69 Salt bridges: A:R.10, A:R.70 SO4.7: 2 residues within 4Å: Chain A: G.20, R.22 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.22 SO4.10: 5 residues within 4Å: Chain B: R.10, K.67, I.68, R.69, R.70 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.69, B:R.70 Salt bridges: B:R.10, B:R.70 SO4.11: 1 residues within 4Å: Chain B: R.17 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.13 Salt bridges: B:R.17

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.8: 3 residues within 4Å: Chain A: C.65, I.71, E.72 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barber-Zucker, S. et al., MamM CTD E289D - Cadmium form. To Be Published

Release Date

2019-09-18

Peptides

Magnetosome protein MamM, Cation efflux protein family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Magnetosome protein MamM, Cation efflux protein family

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