SMTL ID : 6hj2.1

Crystal structure of hPXR in complex with dabrafenib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

monomer

Ligands

1 x P06: Dabrafenib(Non-covalent)

P06.1: 15 residues within 4Å: Chain A: M.124, S.128, F.132, F.162, C.165, Q.166, F.169, W.180, Y.187, M.204, H.288, L.292, F.301, M.306, F.310 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.162, A:F.162, A:F.169, A:W.180, A:W.180, A:Y.187, A:Y.187, A:L.292, A:F.301 Hydrogen bonds: A:S.128, A:S.128 Water bridges: A:D.86, A:L.90 Halogen bonds: A:S.128

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schneider, M. et al., Structure-Based and Knowledge-Informed Design of B-Raf Inhibitors Devoid of Deleterious PXR Binding. J.Med.Chem. (2022)

Release Date

2020-03-25

Peptides

Nuclear receptor subfamily 1 group I member 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor subfamily 1 group I member 2